SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142265

Length: 985 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene142265 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L3, component of cytosolic 80S ribosome and 60S large subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RQG7_OSTLU	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Ribosomal protein L3	-	-	1.075e-17	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00010223001; GSVIVT00019342001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L3	IPR000597	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Ribosomal protein L11, bacterial-type	IPR006519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	85%
RefSeq	Arabidopsis thaliana	NP_001077671.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002306708.1	predicted protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: Overlapping hits, possible frame ERROR between 464 and 433, Distance to subject end: 22 aas, your sequence is shorter than subject: 321 - 389

Fln protein: MGRDFGGRQEEAGGGVAAEEMSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKYDSEDGKKEIQAELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMxxxxxxxxxxxxVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSS

Protein Length: 322

Fln nts: GATTCAGGGCTCCCGACTAATAC_-_ATGGGGAGGGACTTTGGGGGAAGACAGGAGGAAGCAGGAGGGGGAGTTGCAGCTGAAGAGATGAGTCACAGGAAGTTCGAGCATCCCAGGCATGGCTCTCTGGGATTTCTCCCTCGCAAGAGGGCACGTAGACATAGGGGCAAAGTGAAGTCATTCCCTAGGGATGATCCATCGAAGCCCTGCAAGCTGACGGCCTTTTTGGGCTACAAGGCCGGCATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGTATGATTCCGAGGATGGTAAGAAGGAGATCCAGGCGGAGCTCGAGAAAATGAAGAAGTATGCAACCGTCATTAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAACAGAAGAAGGCACACCTAATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTAGATTATGCGTATAACTTCTTTGAGAAACAAGTTCCTATTGATGCTCTTTTCCAAAAAGATGAAATGATTGATGTTATTGGTGTCACAAAGGGTAAGGGCTATGAAGGTGTGGTAACCAGGTGGGGTGTTACAAGACTGCCCCGAAAAACTCACAGGGGTTTGCGTAAGGTAGCTTGTATTGGTGCTTGGCATCCAGCTAGGGTTTCCTTTACTGTTGCCAGGGCTGGTCAGAATGGTTACCATCATCGTACTGAGATGAATAAGAAGATCTACAAGATTGGCAAGTCCGATCAGGAATCCCACAAGGCAATGACTGAATTCGATAGGACTGAGAAGGATATAACACCAATGGGTGGTTTCCCTCATTATGGTGTGGTAAAAGATGATTACATTATGATCAGAGGATGTTGTATGGGCACTAAGAAGCGGGTGGTTACTTTGCGGCAGTCATTGCTGAAACAGACTTCTCGTACTGCCTTGGAGGAAATCAAGTTGAAGTTCATTGACACATCCTCTA

Fln Alignment:

AllPine_a_rep_c106312___MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREVEKPGxxxxxxxxxxKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKSDQESHKAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSS
A9NZI7________________MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREVEKPGxxxxxxxxxxKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
884	12		87		0.999964
947		13	81		1.0
948		13		86	1.0
950	13			72	1.0
955	16	83			1.0
956		83		16	1.0
958	73			26	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain