SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140924

Length: 522 nt

UniGene Fasta

>sp_v3.0_unigene140924
AATGTAGACTCTTCTTGAGGTAGCTATACATTTAGAATCAAGAAGTCTTGGTTCTAAACAAATTGAGTACCTAGATTCTGTTGTAGAAAAAATGTTGAACCCAAAGCCTGATGGATCCTATGAATTAAGTGCTGCAGATCGAGAGGAAATATCAGGCATATTTTTAGAGTTTGTTGACATCTTTGGAGATATTCATGCTATAAAGAAGGCAGAATTCCGTCATAGGCAGCTCTTTCAACCTCATAAAAGTTCTGAATCTAAGAAACGATCCCTAGATGGTATTGTATCAGATAAGACTAAAGTTGCGAAAACCTACACATCTGCTCCTGCTGCTGTATCTCCTGCACAATCTGGTGTGTCGGCTTATCCAAATGGACAGGCCGACACACCAGATTGTGCAGGAGATACAGCAGCAGGAGCAGATGTGTCGGCTTATCCAAATGGACAGGCCCAGTGGGGTGCAGGCTATGCTCAGCAGTCTCAAAGTTGGCAGCAGCCACAGCTCAGCAGCCTCCCAGATGC

Ace file of the UniGene sp_v3.0_unigene140924

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb\|AAL07170.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14126.1\| unknown protein [Arabidopsis thaliana] gb\|AAM65430.1\| unknown [Arabidopsis thaliana] gb\|AEE27652.1\| pre-mRNA-processing factor 39 [Ar	-	-	1.0e-23	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	GSVIVT00028510001; PHYPADRAFT_119915; RCOM_0542310;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04080.3	PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein chr1:1051803-1056550 FORWARD LENGTH=823	3.0e-28	48%
RefSeq	Arabidopsis thaliana	NP_001154302.1	pre-mRNA-processing factor 39 [Arabidopsis thaliana]	2.0e-28	48%
RefSeq	Populus trichocarpa	XP_002303113.1	predicted protein [Populus trichocarpa]	1.0e-26	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB58

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 173 - 268

Fln protein: M*TLLEVAIHLESRSLGSKQIEYLDSVVEKMLNPKPDGSYELSAADREEISGIFLEFVDIFGDIHAIKKAEFRHRQLFQPHKSSESKKRSLDGIVSDKTKVAKTYTSAPAAVSPAQSGVSAYPNGQADTPDCAGDTAAGADVSAYPNGQAQWGAGYAQQSQSWQQPQLSSLPD

Protein Length: 174

Fln nts: AATGTAGACTCTTCTTGAGGTAGCTATACATTTAGAATCAAGAAGTCTTGGTTCTAAACAAATTGAGTACCTAGATTCTGTTGTAGAAAAAATGTTGAACCCAAAGCCTGATGGATCCTATGAATTAAGTGCTGCAGATCGAGAGGAAATATCAGGCATATTTTTAGAGTTTGTTGACATCTTTGGAGATATTCATGCTATAAAGAAGGCAGAATTCCGTCATAGGCAGCTCTTTCAACCTCATAAAAGTTCTGAATCTAAGAAACGATCCCTAGATGGTATTGTATCAGATAAGACTAAAGTTGCGAAAACCTACACATCTGCTCCTGCTGCTGTATCTCCTGCACAATCTGGTGTGTCGGCTTATCCAAATGGACAGGCCGACACACCAGATTGTGCAGGAGATACAGCAGCAGGAGCAGATGTGTCGGCTTATCCAAATGGACAGGCCCAGTGGGGTGCAGGCTATGCTCAGCAGTCTCAAAGTTGGCAGCAGCCACAGCTCAGCAGCCTCCCAGATGC

Fln Alignment:

AllPine_a_rep_c102592___TLLEVAIHLESRSLGSKQIEYLDSVVEKMLNPKPDGSYELSAADREEISGIFLEFVDIFGDIHAIKKAEFRHRQLFQPHK-SSESKKRSLDGIVSDKTKVAKTYTSAPAAVSPAQSGVSAYPNGQA
D5AB58________________TLLEVAIHLESRRLGSKQIDYLDSVVEKMLNPKPDGSYELSAADREEISSIFLEFVDIFGDIHALKKAEFRHRQLFLPHKSSSESKKRSLDSIASDKNKVAKTYTTAPAAVSPAQSGMSAYPNGQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain