SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140819

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene140819
CGTCGTGACCTTGGCTGTCACTCAATTCAAGACATCATGGCGCAGGGTTTCCTCTGCAAGCTGGCCCTTGTTATGGTAGTTATGGGATTGAGTGCAGTCCTAAGCGTGTCATCCAATTCTGAGGGGGATGCACTTCATGCTTTCAGGAGGAGTTTATCAGATCCGCTCAATGTTTTGCAGAGTTGGGATCCTACTCTTGTCAATCCTTGCACTTGGTTCCACATCACTTGCAATCAGGACAACCGTGTTACCAGGATAGACCTGGGTAATTCGAATCTCTCCGGTAGTCTTGTGCCTGAGCTTGGGAGGCTTGAACACTTGCAATACCTTGAGCTCTACAAAAATCATATTCAAGGAAGCATTCCAGAGGAATTTGGCAATCTAAAGAGCCTTATAAGCATGGACTTGTATAACAACAACAACAAGACACGTGAAATTCCTCGATCATTGGGGAATTTGAAGGCACTTGTATTTTTACGCCTTAACAATAATTCACTGGCTGGACAAATTCCCAGGG

Ace file of the UniGene sp_v3.0_unigene140819 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat protein n=1 Tax=x Citrofortunella microcarpa RepID=Q84N26_9ROSI	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Leucine-rich repeat protein	-	-	1.251e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.709e-07	-

Source	Gene names
Sma3	AT1G34210; AT1G60800; AT1G71830; AT2G13790; AT2G13800; AT3G25560; AT4G33430; AT5G10290; AT5G21090; AT5g21090/T10F18_120; At1g34210; At1g60800; At2g13780; At3g25560; At3g43740; At4g33430; At5g10290; At5g21090; BAK1; BISERK1; F14O23.21; F17M5.190; F18D22_60

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	defense response to oomycetes	GO:0002229	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G21090.1	Leucine-rich repeat (LRR) family protein chr5:7164758-7166904 FORWARD LENGTH=218	68%
RefSeq	Arabidopsis thaliana	NP_189960.2	leucine-rich repeat-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002299783.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKM6

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 160 - 216

Fln protein: MAQGFLCKLALVMVVMGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNHIQGSIPEEFGNLKSLISMDLYNNNNKTREIPRSLGNLKALVFLRLNNNSLAGQIPR

Protein Length: 161

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAAGACATC_-_ATGGCGCAGGGTTTCCTCTGCAAGCTGGCCCTTGTTATGGTAGTTATGGGATTGAGTGCAGTCCTAAGCGTGTCATCCAATTCTGAGGGGGATGCACTTCATGCTTTCAGGAGGAGTTTATCAGATCCGCTCAATGTTTTGCAGAGTTGGGATCCTACTCTTGTCAATCCTTGCACTTGGTTCCACATCACTTGCAATCAGGACAACCGTGTTACCAGGATAGACCTGGGTAATTCGAATCTCTCCGGTAGTCTTGTGCCTGAGCTTGGGAGGCTTGAACACTTGCAATACCTTGAGCTCTACAAAAATCATATTCAAGGAAGCATTCCAGAGGAATTTGGCAATCTAAAGAGCCTTATAAGCATGGACTTGTATAACAACAACAACAAGACACGTGAAATTCCTCGATCATTGGGGAATTTGAAGGCACTTGTATTTTTACGCCTTAACAATAATTCACTGGCTGGACAAATTCCCAGGG

Fln Alignment:

AllPine_a_rep_c102246___MAQGFLCKLALVMVVMGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNHIQGSIPEEFGNLKSLISMDLYNNNNKTREIPRSLGNLKALVFLRLNNNSLAGQIPR
A9NKM6________________MAKGFLCKLALVAVVIGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNRIGGSIPEEFGNLKSLISMDLY-NNNITGEIPRSLGNLKSLVFLRLNNNSLTGQIPR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
253	25	75			0.996473
257			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
93	106	TTG TTG TTG TTG TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain