SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140734

Length: 362 nt

UniGene Fasta

>sp_v3.0_unigene140734
AGTTAAGCGCAGATTCATGACATTTTGTAGGCGCTGAATAGCATCTTGGACCTCTTCTCGCTGCAGTTTAGCTGTCAGTGAAAAACTTGAGACGTCATTGCGTGATCTTGCACGGACTGGAGACGTACAAGCTTGCAAGGCTGTTCGGAAGGCAGCTGATGCTACATTGAAAGATACTGCGAAGGAGCTGAAGTCTATACTTGATATCTTGCAGTCTTCCTCCCAAGCGTTGCATATTTTGCCCAAGGTAGAAGAGTTGATTCATAAAGAGAAAGAAAAGCAGGACAAGTTAATTCAGAAACATACTGTAGTAGTTGATAGCTACGATAAGAAGCTACCAAGTAAGGAGATTGACAGTCGCA

Ace file of the UniGene sp_v3.0_unigene140734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribophorin I [Arabidopsis thaliana] gb\|AAF16661.1\|AC012394_10 putative ribophorin I (dolichyl-diphosphooligosaccharide-protein glycosyltransferase); 43789-46748 [Arabidopsis thaliana] gb\|AAL91186.1\| putative dolichyl-diphosphooligosaccharide-protein glyco	-	-	1.0e-20	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%

Source	Gene names
Sma3	At1g76400; F15M4.10; GSVIVT00002915001; Os05g0301500; OsI_19365; OsJ_17960; POPTRDRAFT_550740; POPTRDRAFT_559983; RCOM_1601890; VITISV_024652; rib-1;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tyrosine-protein kinase, receptor class II, conserved site	IPR002011	-	0.0	-
Sma3	Ribophorin I	IPR007676	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76400.1	Ribophorin I chr1:28658713-28661672 REVERSE LENGTH=614	1.0e-25	59%
RefSeq	Arabidopsis thaliana	NP_177766.1	Ribophorin I [Arabidopsis thaliana]	2.0e-25	59%
RefSeq	Populus trichocarpa	XP_002300630.1	predicted protein [Populus trichocarpa]	9.0e-27	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BH89

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 25 aas, your sequence is shorter than subject: 120 - 174

Fln protein: VKRRFMTFCRR*IASWTSSRCSLAVSEKLETSLRDLARTGDVQACKAVRKAADATLKDTAKELKSILDILQSSSQALHILPKVEELIHKEKEKQDKLIQKHTVVVDSYDKKLPSKEIDSR

Protein Length: 121

Fln nts: AGTTAAGCGCAGATTCATGACATTTTGTAGGCGCTGAATAGCATCTTGGACCTCTTCTCGCTGCAGTTTAGCTGTCAGTGAAAAACTTGAGACGTCATTGCGTGATCTTGCACGGACTGGAGACGTACAAGCTTGCAAGGCTGTTCGGAAGGCAGCTGATGCTACATTGAAAGATACTGCGAAGGAGCTGAAGTCTATACTTGATATCTTGCAGTCTTCCTCCCAAGCGTTGCATATTTTGCCCAAGGTAGAAGAGTTGATTCATAAAGAGAAAGAAAAGCAGGACAAGTTAATTCAGAAACATACTGTAGTAGTTGATAGCTACGATAAGAAGCTACCAAGTAAGGAGATTGACAGTCGCA

Fln Alignment:

AllPine_a_rep_c101941___SRCSLAVSEKLETSLRDLARTGDVQACKAVRXXXXXXXXXXXXELKSILDILQSSSQALHILPKVEELIHKEKEKQDKLIQKHTVVVDSYDKKLPSKEIDSR
A5BH89________________SRC-LSIHDKLEASLRDLSRTGDVQACKAARKASDGQLKELSKELRPLLAFLQSSPQAAQILPKVEELVAKERELQEKLMLKHTTVADSYEKKSGGKEIENR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain