SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140699

Length: 566 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene140699
GCTTATATGACAGACCTTCGTAAACAGTATCTTTTCCACCATTTATCGTGCCAACCAAGAGAACATGTTATCTGACTCTGGGAAAGCTGAAATTCCAGGATCACCACGCAACTCAAGGACATCAGCGCGGACCCAACAAACCAGACCAACACGCCTATAATGTCAAATACTAAGCAGACTCAATCTGTATCGAAAACTATGGATAGCCGTGCTGTATCTCGAAGGTTGCAGTCCGAGCTGATGGCATTGATGATGAGTGGTGATCCTGGAATTTCAGCTTTCCCAGAGTCAGATAACATGTTCTCTTGGGTTGGCACGATAAATGGTGGAAAAGATACTGTTTACGAAGGTCTGTCATATAAGCTTTCTTTGCGCTTCCCAGTGGATTATCCCTTCAAGCCTCCACAAGTGAAGTTTGAGACAGCTTGCTTCCATCCTAATGTTGATCAGTATGGAAACATCTGCTTAGACATTCTTCAGGATAAATGGTCCTCTGCATATGAGGTTCGAACTGTTCTGCTGTCTATTCAGAGTCTTTTGGGAGAACCAAATAATGAATCTCCTCT

Ace file of the UniGene sp_v3.0_unigene140699 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5A9Q7_PICSI	-	-	95%
FL-Next	sp=Ubiquitin-conjugating enzyme E2 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Sma3	Ubiquitin carrier protein	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		0.0	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	%
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	4.006e-19	-

Source	Gene names
Sma3	At1g16890; At1g50490; At1g64230; At1g78870; At2g16740; At3g20060; CHLREDRAFT_129070; CHLREDRAFT_152525; F11F12.16; F17F16.19; F17J6.3; F22C12.2; F6I1.11; F9K20.8; GSVIVT00018215001; GSVIVT00022226001; GSVIVT00023926001; GSVIVT00027804001; GSVIVT0003344800

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	UBC13-MMS2 complex	GO:0031372	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	cell proliferation	GO:0008283	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3		IPR015582	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50490.1	UBC20 ubiquitin-conjugating enzyme 20 chr1:18705005-18706303 REVERSE LENGTH=180	72%
RefSeq	Arabidopsis thaliana	NP_564572.1	ubiquitin-conjugating enzyme E2 20 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002299793.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8L7T3

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 135 - 180

Fln protein: MSNTKQTQSVSKTMDSRAVSRRLQSELMALMMSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESP

Protein Length: 136

Fln nts: GCTTATATGACAGACCTTCGTAAACAGTATCTTTTCCACCATTTATCGTGCCAACCAAGAGAACATGTTATCTGACTCTGGGAAAGCTGAAATTCCAGGATCACCACGCAACTCAAGGACATCAGCGCGGACCCAACAAACCAGACCAACACGCCTATA_-_ATGTCAAATACTAAGCAGACTCAATCTGTATCGAAAACTATGGATAGCCGTGCTGTATCTCGAAGGTTGCAGTCCGAGCTGATGGCATTGATGATGAGTGGTGATCCTGGAATTTCAGCTTTCCCAGAGTCAGATAACATGTTCTCTTGGGTTGGCACGATAAATGGTGGAAAAGATACTGTTTACGAAGGTCTGTCATATAAGCTTTCTTTGCGCTTCCCAGTGGATTATCCCTTCAAGCCTCCACAAGTGAAGTTTGAGACAGCTTGCTTCCATCCTAATGTTGATCAGTATGGAAACATCTGCTTAGACATTCTTCAGGATAAATGGTCCTCTGCATATGAGGTTCGAACTGTTCTGCTGTCTATTCAGAGTCTTTTGGGAGAACCAAATAATGAATCTCCTCT

Fln Alignment:

AllPine_a_rep_c101808___PIMSNTKQTQSVSKTMDSRAVSRRLQSELMALMMSGDPGISAFPESDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICLDILQDKWSSAYEVRTVLLSIQSLLGEPNNESP
Q8L7T3________________PASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain