SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140628

Length: 700 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene140628

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leukotriene-A4 hydrolase [Arabidopsis thaliana] emb\|CAC05429.1\| leukotriene-A4 hydrolase-like protein [Arabidopsis thaliana] gb\|AAL67031.1\| putative leukotriene-A4 hydrolase [Arabidopsis thaliana] gb\|AAM91766.1\| putative leukotriene-A4 hydrolase [Arabidop	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Leukotriene A-4 hydrolase, putative	-	-	3.642e-09	-

Source	Gene names
Sma3	At5g13520; GSVIVT00029481001; LOC_Os03g60460; OJ1754_E06.9; Os03g0819100; OsI_14085; OsJ_13129; POPTRDRAFT_567536; POPTRDRAFT_832515; RCOM_1071080; RCOM_1071200; T6I14_50; VITISV_017527;

Source	GOs	Term	Type	Identity
Sma3	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	leukotriene biosynthetic process	GO:0019370	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal	IPR015211	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13520.1	peptidase M1 family protein chr5:4342117-4344571 REVERSE LENGTH=616	74%
RefSeq	Arabidopsis thaliana	NP_196856.1	leukotriene-A4 hydrolase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002316336.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
375		25	75		0.996473
377	75			25	0.996473
379			25	75	0.996473
380			75	25	0.996473
383	75	25			0.996473
384		25		75	0.996473
386		75		25	0.996473
387		75	25		0.996473
388			25	75	0.996473
390		75		25	0.996473
391	75		25		0.996473
392			75	25	0.996473
393	75	25			0.996473
394	25			75	0.996473
395		25	75		0.996473
423	80			20	0.995493
425	80		20		0.995493
426	80			20	0.995493
428	20		80		0.995493
429		20		80	0.995493
434			20	80	0.995493
444			80	20	0.995493
445		20	80		0.995493
446	20		80		0.995493
605		20		80	0.995493
606	20		80		0.995493
608		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain