SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140602

Length: 533 nt

UniGene Fasta

>sp_v3.0_unigene140602
TGAGCTCAATGCTTGCATTAATTTTTTTGTGGTTAATGCCACTGCAGGAGTCTTCAATGCCCTTTGCTGAATCCAAACTTTCTTGGGTGTGTTGAGAATGCTTTGGGCATACGAGAATGGCTGGAATCTAATGGTCACCAGTAGAACTGAGTTCCCTCTGCGAACCTGAATTTTGTTTTTGCATTCCCGGAAGCATTAGCCTGCTCGCATACCCCACCCTGCCAATACCAAAATCCAAACAGGGTTTACTTTTTCATTTATGTTTTTCAGGCCAAGTTTTATCCGAGTATCTTTTCTCAGCTTCCTCTGTTCAGTGGCTATTGACGGTTTTGACTTTGGCTTTGGTTTTTCATATCAGATACTATATCAGTGGCAATGTCTATCCGCTTGTGATTGCTGCACATCCATCAAGAACCTAATCAGTTTGCCATTGGGTTGACTGTGGCGTTGTCTCAACACCAGCTTGTAGAAGTTCTTCCATGTTCACATTCCATTGAGAGCTGTTGAAAAGGAACATGAGAGTTTGCAAAGGC

Ace file of the UniGene sp_v3.0_unigene140602

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Formate dehydrogenase, mitochondrial n=2 Tax=Solanum RepID=FDH_SOLTU	-	-	6.0e-06	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	NAD-dependent formate dehydrogenase	-	-	1.89e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Formate dehydrogenase.	EC:1.2.1.2	-	3.464e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	3.464e-08	%
Sma3	Methane metabolism	00680	3.464e-08	%
Sma3	Metabolic pathways	01100	3.464e-08	%

Source	Gene names
Sma3	At5g14780; FDH; FDH1; T9L3_80; fdh;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	formate dehydrogenase (NAD+) activity	GO:0008863	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV09

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 178 aas, your sequence is shorter than subject: 48 - 388

Fln protein: *AQCLH*FFCG*CHCRSLQCPLLNPNFLGCVENALGIREWLESNGHQ*

Protein Length: 49

Fln nts: TGAGCTCAATGCTTGCATTAATTTTTTTGTGGTTAATGCCACTGCAGGAGTCTTCAATGCCCTTTGCTGAATCCAAACTTTCTTGGGTGTGTTGAGAATGCTTTGGGCATACGAGAATGGCTGGAATCTAATGGTCACCAGTAGAACTGAGTTCCCTCTGCGAACCTGAATTTTGTTTTTGCATTCCCGGAAGCATTAGCCTGCTCGCATACCCCACCCTGCCAATACCAAAATCCAAACAGGGTTTACTTTTTCATTTATGTTTTTCAGGCCAAGTTTTATCCGAGTATCTTTTCTCAGCTTCCTCTGTTCAGTGGCTATTGACGGTTTTGACTTTGGCTTTGGTTTTTCATATCAGATACTATATCAGTGGCAATGTCTATCCGCTTGTGATTGCTGCACATCCATCAAGAACCTAATCAGTTTGCCATTGGGTTGACTGTGGCGTTGTCTCAACACCAGCTTGTAGAAGTTCTTCCATGTTCACATTCCATTGAGAGCTGTTGAAAAGGAACATGAGAGTTTGCAAAGGC

Fln Alignment:

AllPine_a_c101366___LNPNFLGCVENALGIREWLESNGHQ
A9NV09________________LNPNFLGCVENALGIREWLESKGHQ

SNPs (tot: 3)

Position	C %	G %	T %	Probability
350	33	66		0.997452
363		80	20	0.995493
432		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain