SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140409

Length: 1168 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene140409 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	0.0	100%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	100%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.557e-20	-

Source	Gene names
Sma3	AT1G34210; AT1G71830; AT2G13790; AT2G13800; AT2G23950; AT4G30520; AT4G33430; AT4g30520; AT5G10290; AT5G16000; AT5G63710; AT5G65240; At1g34210; At2g13780; At2g13790; At2g13800; At2g23950; At3g25560; At4g30520; At4g33430; At5g10290; At5g16000; At5g63710; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	defense response to oomycetes	GO:0002229	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34210.1	SERK2, ATSERK2 somatic embryogenesis receptor-like kinase 2 chr1:12459078-12462752 FORWARD LENGTH=628	81%
RefSeq	Arabidopsis thaliana	NP_174683.1	somatic embryogenesis receptor kinase 2 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002334250.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 283 - 626

Fln protein: FRDLGI*FLIFF*FLKHFSELVSLLPGNWKVPFIHPQNLRSIPETWCNIGSLDQLYFPAFD*VVYTPLILFIKGDRICGGFPLTSFPLVHVKTFRKYVKFII*HQSDIDM*LISASFSQQFTFMMIRS*EIFMDS*NLESLDNVNIPNFLIDPQRFYKEFNDSVHWAYR*YCVVC*QVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR*

Protein Length: 284

Fln nts: TTCAGGGATTTAGGTATTTAATTCTTAATATTCTTTTAATTTTTGAAACATTTTTCTGAGCTTGTCTCCCTGCTCCCTGGAAATTGGAAGGTACCTTTCATCCATCCCCAAAATCTGCGTTCCATTCCCGAAACATGGTGCAACATAGGTTCTTTGGATCAATTGTATTTTCCTGCATTTGATTAGGTTGTGTACACTCCGTTGATCTTATTTATCAAAGGTGATCGTATCTGTGGTGGTTTTCCTTTGACATCTTTTCCCCTTGTACATGTTAAGACTTTTAGAAAATATGTGAAATTTATAATTTAACATCAGTCAGATATAGATATGTGACTAATTTCTGCGAGTTTCTCACAACAATTTACTTTCATGATGATTCGGTCTTGAGAAATATTTATGGATAGTTGAAATCTTGAGAGCCTGGATAATGTCAATATTCCAAATTTTCTGATTGATCCCCAGAGGTTTTACAAGGAATTCAATGATTCAGTGCATTGGGCTTACAGATAATATTGTGTTGTTTGTTGACAGGTTAAAGGCCTATTAAAAGAGAGAAGGCTTGATATGCTAGTTGATCCTGATCTTAAGAACAATTATGTTGAAGCAGAGGTGGAACAACTTATTCAAGTTGCATTACTTTGTACACAAGGGTCACCAATGGATAGACCAAAGATGTCTGAAGTGGTACGGATGTTGGAAGGGGATGGCTTAGCCGAGAGATGGGAGGAATGGCAAAAGGTGGAAGTCGTACGGAGCCAAGAAGTTGAACTTGTTCCTCATAGAAATTCAGAATGGATTGTCGACTCAACAGATAATCTTCATGCAGTTGAATTGTCTGGTCCAAGATGA___TAAGAGTTGAATTGTTTATTCAATCTTTGCAAAGCCAAAATTTTATTGAGTCCAAATTACAATGTCAATATGTATCGAGGTTGAATCGATGTATCATTTTCAAGCATATTTTAGTAGATGCGTCAATGTGCGAATGTAGAGAATATTCGTTGCAAGTCCTTAGATGGCTATGCTGGGTTTTGTCCCATGAGAATTTCTGTCGGGTTGTAGTCAAACCCGAAAGTTAGAAGGATTTCTTATGGTGCATCCCATCCAGGCAAAGATCTGGGCTCCTGTATTATGAATGGTTTGCTCTAGGAATCGAAGCTCCATTTCTGCT

Fln Alignment:

AllPine_a_rep_c100087___VKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR
D5FY57________________VKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 3)

Position	A %	C %	T %	Probability
571		16	83	0.994512
814		11	88	0.923564
994	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain