SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140365

Length: 1444 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene140365

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ protein homolog n=12 Tax=core eudicotyledons RepID=DNJH_CUCSA	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Biotin carboxyl carrier protein	-	-	4.055e-26	-

Source	Gene names
Sma3	A2; A3; ACCB-1; ATJ; ATJ2; ATJ3; At3g44110; At5g15530; At5g16390; At5g22060; B38; BCCP1; BCCP2; CAC1; CHLREDRAFT_170453; DNAJ; DNAJ1; DNJ1; F26G5.60; GSVIVT00002640001; GSVIVT00019136001; GSVIVT00021060001; GSVIVT00025048001; GSVIVT00037272001; J3; LDJ2;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	acetyl-CoA carboxylase complex	GO:0009317	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	biotin binding	GO:0009374	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Acetyl-CoA biotin carboxyl carrier	IPR001249	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G44110.1	ATJ3, ATJ DNAJ homologue 3 chr3:15869115-15871059 REVERSE LENGTH=420	75%
RefSeq	Arabidopsis thaliana	NP_189997.1	chaperone protein dnaJ 3 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002316479.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQA1

Fln msg: Separated hits, possible frame ERROR between 708 and 726, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 301 - 421

Fln protein: GEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCSKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHVCSDCRxxxxxxxINEKDRCPQCKGEKVLPDKKMLEVTVEK*MQNGQRITFQGEADEAPDTVTGDIVFVVQQKEHPKFKRKGDDLFVEHTLLLTEALCGFQFILTHLDGRQLLIKSGPGEVVKPGQFKAINDEGMPVYQRPFMKGNLYIHFSVEFPDSFTPEQCKALEAVLPPRTASQLTDMELDECEETTLHDVNLEEEMRKKQSQQEAYEEDEEGSGGPRVQCAQQ*

Protein Length: 302

Fln nts: CAAACCAAATATCCACATGACATTTTGTCTACCTGCAACTTTGATGTTCAAAGTCTCCAGATTCATGTCTTGATCACGAAGAGAGGCATGTCAATAGCAACTGGCTTGCCGTCCTCAACAAGAATTTCAACAATTGTTCCTGATCGGTCAGCCTCAATTTCATTCATCAGTTTCATGGCTTCAACAATGCAAATCACCTGCCCTTTCTGGACTTTATCTCCAACCTTAACAAAATGCGGTTGACCAGGGCCAGGACTGCGGTAGAAAGTTCCTGCCATAGGGCATTTAAAACTTGCTTGCCCTGATTGATCTGGCTTTGCAGGAGCCTGAGGTTGGGTAGGAGTTGAAGGACCAGCAGGAACAAGGTCATATGTCGGTCGATCAGTTGCAACAGCTGGTGATGGTGGTGGAGCTGGGGCTGGCGGGTAAAGGGAATGTACCATTACAGGTGGAGATGGAGCAGGAGGCTGAGGCGAAGATGTTGTTCACCCCTTGAAGGTATCATTGGAAGACCTTTACAATGGAACATCAAAGAAGTTGTCACTATCTCGAAATGTTCTGTGCTCTAAATGCAAGGGGAAAGGGTCAAAGTCTGGCGCATCAATGAAATGCAGTGGGTGCCAAGGGTCTGGCATGAAGGTCTCTATTAGACATCTTGGACCTTCGATGATCCAGCAGATGCAACATGTCTGCAGTGATTGTAGGGGxxxxxxxxxxxxxxxxxxTATAAATGAAAAAGATAGATGCCCACAATGCAAGGGTGAAAAAGTCTTACCCGACAAGAAAATGCTCGAGGTCACAGTTGAGAAGTGAATGCAAAATGGTCAGAGGATCACTTTCCAAGGGGAAGCAGATGAAGCGCCCGACACAGTTACTGGTGACATTGTATTTGTGGTTCAACAAAAGGAGCATCCCAAATTCAAGAGAAAGGGGGACGATCTTTTCGTTGAGCATACTTTATTATTGACAGAGGCATTGTGCGGGTTTCAGTTTATATTGACCCATCTGGATGGTCGGCAACTGCTTATTAAATCTGGTCCCGGTGAAGTTGTTAAGCCAGGTCAGTTCAAGGCTATTAATGATGAAGGAATGCCTGTTTACCAGCGGCCATTCATGAAGGGTAATCTGTACATTCATTTCTCTGTAGAGTTCCCAGATTCTTTTACTCCTGAACAGTGCAAGGCTCTGGAAGCAGTTTTGCCTCCTCGAACTGCAAGCCAGCTAACAGACATGGAGTTAGATGAGTGCGAGGAAACAACACTCCATGATGTAAACTTGGAGGAAGAAATGAGGAAGAAACAAAGTCAACAGGAGGCTTATGAGGAAGATGAGGAAGGCTCCGGTGGGCCAAGGGTACAATGTGCTCAACAATGAGAATAGTTGATTCATCGGTTATATATGCATTCCGTATTTGTTTACCCTGATTCAGGAAGTTACAGATCGTT

Fln Alignment:

AllPine_a_rep_c99776___EDVVHPLKVSLEDLYNGTSKKLSLSRNVLXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHVCSDCRGxxxxxxINEKDRCPQCKGEKVLPDKKMLEVTVEK*MQNGQRITFQGEADEAPDTVTGDIVFVVQQKEHPKFKRKGDDLFVEHTLLLTEALCGFQFILTHLDGRQLLIKSGPGEVVKPGQFKAINDEGMPVYQRPFMKGNLYIHFSVEFPDS--FTPEQCKALEAVLPPRTASQLTDMELDECEETTLHDVNLEEEMRKK--QSQQEAYEEDEEGSGGPRVQCAQQ
C0PQA1________________EDVVHPLKVSLDDLYNGTSRKLSLSRNVICSKCKGKGSKSGASGRCIGCQGSGMKVSIRQLGPGMIQQMQHVCPDCRGxxxxxxISDKDKCGQCKGSKVVQDKKVLEVHVEKGMQHGQRIVFQGEADEAPDTITGDIVFVLQLKDHSKFKRKGDDLYVEHTLNLTEALCGFQFPLTHLDGRQLLIKSSPGEIIKPSQYKAINDEGMPQYQRPFMKGRLYIHFNVEFPESGALSPEQCKALESILPPRPAGYMTDMELDECEETTLHDVNIEDELRRKQQQQQQEAYEEDDEPQ-GHRVQCAQQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
972	20	80			0.999999
975	80			20	0.999999
1005	16			83	1.0
1007			16	83	1.0
1008		83	16		1.0
1009	83		16		1.0
1102	95		4		0.995482
1103			4	95	0.995482
1181	6			90	0.997952
1257	5		83		0.999887
1263		11		88	0.999937
1291	10		90		0.90298
1292	10			90	0.90298
1296	11	88			0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain