SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138512

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene138512
CGTCGTGACCTTGGCTGTCACTCATCGTTGTAGGTGGAGCAGGAGGTTTTGGTAGCCTGGCTATTCAGCTTGCCAAGTATGTGTATGGAGCTTCAAAAATAGCAACTACTACAAGCACTGGGAATGTGGATTTTTTGAGACAATTAGGAGCTGATACGGTGATTGATTATAGGAAGCAAAGCTATGATCAAATACCACAAAAGTT

Ace file of the UniGene sp_v3.0_unigene138512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	quinone oxidoreductase-like protein [Arabidopsis thaliana]	-	-	5.0e-14	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	OSJNBb0011E04.125; Os08g0379400; OsI_29063; OsJ_27134; P0709D11.15;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein chr1:8398245-8399656 REVERSE LENGTH=386	4.0e-18	56%
RefSeq	Arabidopsis thaliana	NP_173786.1	quinone oxidoreductase-like protein [Arabidopsis thaliana]	5.0e-18	56%
RefSeq	Populus trichocarpa	XP_002323668.1	predicted protein [Populus trichocarpa]	1.0e-19	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMT8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 96 aas, your sequence is shorter than subject: 67 - 222

Fln protein: S*PWLSLIVVGGAGGFGSLAIQLAKYVYGASKIATTTSTGNVDFLRQLGADTVIDYRKQSYDQIPQK

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTTGTAGGTGGAGCAGGAGGTTTTGGTAGCCTGGCTATTCAGCTTGCCAAGTATGTGTATGGAGCTTCAAAAATAGCAACTACTACAAGCACTGGGAATGTGGATTTTTTGAGACAATTAGGAGCTGATACGGTGATTGATTATAGGAAGCAAAGCTATGATCAAATACCACAAAAGTT

Fln Alignment:

AllPine_a_rep_c97250___SLIVVGGAGGFGSLAIQ----------------------------------LAKYVYGASKIATTTSTGNVDFLRQLGADTVIDYRKQSYDQIPQK
B8LMT8________________SVFIVGGAGGVGSLAIQVKVNTILLPLKTSRNLVPLQNDRVRSFNNTCVVQLAKYVYGASKIATTTSTGKVDFVRQLGADTVIDYTKQSYDQIPQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain