SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138323

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene138323
ATGGTGCAGACAACAAGGGAGAAAGTCCTTCGTCAAGTCCCGACCATCCAGAAGATCCTTCGGCAGCTGAGTATGAAATTACAGAGGAGAGCAGAAAGGTTCGAGAGAGGCAAGAACAGGCTATTCAGGAGCTTCTGCTGCGGAGGCGTGCCTATGCATTGGCAGTCCCTACCAATGACTCTTCGGTGCGTGCTCGTCTTCGTCGCCTGAACGAACCTATTA

Ace file of the UniGene sp_v3.0_unigene138323

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj\|BAF01385.1\| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana]	-	-	6.0e-07	57%
FL-Next	sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%

Source	Gene names
Sma3	At2g41500; EMB2776; GSVIVT00025331001; GSVIVT00037439001; LOC_Os03g23909; LOC_Os03g23929; Os03g0355200; OsI_02814; PHYPADRAFT_119600; RCOM_0255520; T26J13.9; T32G6.2; VITISV_016440;

Source	GOs	Term	Type	Identity
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	cell fate determination	GO:0001709	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	embryo sac egg cell differentiation	GO:0009560	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Splicing factor motif	IPR003648	-	-
Sma3	Pre-mRNA processing factor 4 (PRP4)-like	IPR014906	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22212

Fln msg: Distance to subject end: 417 aas, your sequence is shorter than subject: 73 - 554

Fln protein: GADNKGESPSSSPDHPEDPSAAEYEITEESRKVRERQEQAIQELLLRRRAYALAVPTNDSSVRARLRRLNEPI

Protein Length: 74

Fln nts: ATGGTGCAGACAACAAGGGAGAAAGTCCTTCGTCAAGTCCCGACCATCCAGAAGATCCTTCGGCAGCTGAGTATGAAATTACAGAGGAGAGCAGAAAGGTTCGAGAGAGGCAAGAACAGGCTATTCAGGAGCTTCTGCTGCGGAGGCGTGCCTATGCATTGGCAGTCCCTACCAATGACTCTTCGGTGCGTGCTCGTCTTCGTCGCCTGAACGAACCTATTA

Fln Alignment:

AllPine_a_rep_c96951___EITEESRKVRERQEQAIQEXXXXXXXXXXXVPTNDSSVRARLRRLNEPI
O22212________________EISEESKQVRERQEKALQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain