SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138122

Length: 375 nt

UniGene Fasta

>sp_v3.0_unigene138122
ATGGGGGAGGTACGATGCTCGTAGGTCTGTGTTAGAGTGGTCAATCTTTCTCATAGATTCCACTCGTGGCCTTGGCTGTATGGAGTTTGTTGTGCCACCGGCAGATCCATCATCGTTTTTCCCTATAGATGTGAGATTTTCTACAGCTAAGACCTTTTGTGATATCAAGGTCGCCAATGTGATACCAGTTAATGGAGGGAGTCCATTAAAGTTTGCCAGTCGAACACAACTGATAACAGAGAATTACCAAGTTGTGTAAATTCATGTTATTGCTGAGCTACGATTGAAGGTCCAGCTGAAATGACCTTACCTGATTGCGCACTTGAATGGATTACTAAACTCAGCATTCGACATTTTACTTGCTTAGTATTGAAT

Ace file of the UniGene sp_v3.0_unigene138122

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin adapter complex medium subunit-like protein (Fragment) n=2 Tax=Picea sitchensis RepID=E0ZB24_PICSI	-	-	2.0e-28	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Delta-COP	-	-	6.271e-09	-

Source	Gene names
Sma3	AT5G05010; At5g05010; GSVIVT00030145001; LOC_Os01g61710; LOC_Os05g24594; LOC_Os08g28080; OSJNBa0091C18.10; OSTLU_94212; Os01g0833700; Os05g0310800; Os05g0311000; Os08g0368000; OsI_04321; OsI_19411; OsI_29009; OsJ_03976; OsJ_18003; OsJ_18004; OsJ_27082; Os

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UPF0103/Mediator of ErbB2-driven cell motility (Memo-related)	IPR002737	-	0.0	-
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05010.1	clathrin adaptor complexes medium subunit family protein chr5:1477137-1479872 FORWARD LENGTH=527	6.0e-24	55%
RefSeq	Arabidopsis thaliana	NP_001031836.1	coatomer subunit delta [Arabidopsis thaliana]	7.0e-24	55%
RefSeq	Populus trichocarpa	XP_002318291.1	predicted protein [Populus trichocarpa]	7.0e-32	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTR0

Fln msg: your sequence is shorter than subject: 86 - 382

Fln protein: WGRYDARRSVLEWSIFLIDSTRGLGCMEFVVPPADPSSFFPIDVRFSTAKTFCDIKVANVIPVNGGSPLKFASRTQLITENYQVV*

Protein Length: 87

Fln nts: ATGGGGGAGGTACGATGCTCGTAGGTCTGTGTTAGAGTGGTCAATCTTTCTCATAGATTCCACTCGTGGCCTTGGCTGTATGGAGTTTGTTGTGCCACCGGCAGATCCATCATCGTTTTTCCCTATAGATGTGAGATTTTCTACAGCTAAGACCTTTTGTGATATCAAGGTCGCCAATGTGATACCAGTTAATGGAGGGAGTCCATTAAAGTTTGCCAGTCGAACACAACTGATAACAGAGAATTACCAAGTTGTGTAA___ATTCATGTTATTGCTGAGCTACGATTGAAGGTCCAGCTGAAATGACCTTACCTGATTGCGCACTTGAATGGATTACTAAACTCAGCATTCGACATTTTACTTGCTTAGTATTGAAT

Fln Alignment:

AllPine_a_rep_c96593___RYDARRSVLEWSIFLIDSTRGLGCMEFVVPPADPSSFFPIDVRFSTAKTFCDIKVANVIPVNGGSPLKFASRTQLITENYQVV
C0PTR0________________RYDSRRSVLEWSIFLIDSTNRSGSMEFVVPPADPSSFFPIDVKFSTAKTFCDIKVANVIPINGVSPLKFAGRTQLVTESYQVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain