|
||||||
|
UniGene Name: sp_v3.0_unigene137386
Length: 210 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
|
|---|
| >sp_v3.0_unigene137386
C |
|
Ace file of the UniGene sp_v3.0_unigene137386 (antisense)
|
|---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
|---|
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Tubulin alpha-2 chain n=20 Tax=Magnoliophyta RepID=TBA2_ORYSJ | - | - | 2.0e-15 | 100% |
| FL-Next | tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. | - | - | 0.0 | 100% |
| Sma3 | Alpha tubulin | - | - | 5.684e-09 | - |
| Source | Gene names |
|---|---|
| Sma3 | AT1; AT4G14960; ATUB1; ATUB3; ATub4; At1g04820; At1g64740; At4g14960; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00025463001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; MtrDRAFT_AC170580g1v1 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
| Sma3 | microtubule | GO:0005874 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | nucleomorph | GO:0033009 | Cellular Component | 0.0 | - |
| Sma3 | protein complex | GO:0043234 | Cellular Component | 0.0 | - |
| Sma3 | GTPase activity | GO:0003924 | Molecular Function | 0.0 | - |
| Sma3 | structural molecule activity | GO:0005198 | Molecular Function | 0.0 | - |
| Sma3 | GTP binding | GO:0005525 | Molecular Function | 0.0 | - |
| Sma3 | microtubule-based process | GO:0007017 | Biological Process | 0.0 | - |
| Sma3 | microtubule-based movement | GO:0007018 | Biological Process | 0.0 | - |
| Sma3 | protein polymerization | GO:0051258 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Tubulin | IPR000217 | - | 0.0 | - |
| Sma3 | Blue (type 1) copper domain | IPR000923 | - | 0.0 | - |
| Sma3 | Alpha tubulin | IPR002452 | - | 0.0 | - |
| Sma3 | Tubulin/FtsZ, GTPase domain | IPR003008 | - | 0.0 | - |
| Sma3 | Beta tubulin, autoregulation binding site | IPR013838 | - | 0.0 | - |
| Sma3 | Tubulin, conserved site | IPR017975 | - | 0.0 | - |
| Sma3 | Tubulin/FtsZ, 2-layer sandwich domain | IPR018316 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT4G14960.2 | - | 7.0e-18 | 100% |
| RefSeq | Arabidopsis thaliana | NP_175423.1 | tubulin alpha-2/alpha-4 chain [Arabidopsis thaliana] | 1.0e-17 | 100% |
| RefSeq | Populus trichocarpa | XP_002324047.1 | tubulin alpha-7 chain [Populus trichocarpa] | 9.0e-18 | 100% |
| Full-Lengther Next Prediction |
|---|
Fln status: N-terminus
Fln database: coniferopsida.fasta
Fln subject: Q5ME66
Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 163 and 148, Distance to subject end: 108 aas, your sequence is shorter than subject: 67 - 451
Fln protein:
M
Protein Length:
68
Fln nts:
C
Fln Alignment:
AllPine_a_rep_c95153___MRECISIHIGQAGIQVGNACWELYCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q5ME66________________MRECISIHIGQAGIQVGNACWELYCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
