SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137260

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene137260
AATGTAGTTATTTTTGTAAATCACCCTCTCCACCTCCTCTGCAGAGGCTCTATCTGCAAGACAACATGTTGATGGGTTCAGTCCCTGTAGAACTTGCAGACTGCACCCAGATGAAGTCCCTTGATTTGAGTTTCAACTATCTTTCGGGTACTATTCCAGCATCGCTTGGGTCTCTTCGGTATCTTCAGGATTTGGTCATGTGGTTGAACAAGCTTGAGGGGGTAATTCCAGATGAACTTTCAAATAGCCAGAGCCTAGAGAATCTGATCCTCGACAATAATTTCATCACGGGTAATATCCCCTCTAGTCTAAAAAATTGCACCAATCTTGTATGGCTCTCTCTTTCAAACAATAGGTT

Ace file of the UniGene sp_v3.0_unigene137260

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Brassinosteroid receptor n=1 Tax=Pisum sativum RepID=Q76FZ8_PEA	-	-	2.0e-32	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	2.236e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.07e-06	-

Source	Gene names
Sma3	AT1G35710; AT1G55610; AT3G13380; AT4G39400; AT5G48940; At1g35710; At1g55610; At3g13380; At4g39400; B1043F11.38; BRI1; BRL1; BRL3; Bri1; CURL3; F14D7.1; F20N2.4; F23K16.30; GSVIVT00003338001; GSVIVT00019364001; Hcr2-0A; LKA; LOC_Os10g02500; LRR-RLK; MRP15.

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	steroid binding	GO:0005496	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	skotomorphogenesis	GO:0009647	Biological Process	-
Sma3	detection of brassinosteroid stimulus	GO:0009729	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39400.1	BRI1, CBB2, DWF2, BIN1, ATBRI1 Leucine-rich receptor-like protein kinase family protein chr4:18324826-18328416 FORWARD LENGTH=1196	2.0e-37	60%
RefSeq	Arabidopsis thaliana	NP_195650.1	protein brassinosteroid insensitive 1 [Arabidopsis thaliana]	2.0e-37	60%
RefSeq	Populus trichocarpa	XP_002310619.1	predicted protein [Populus trichocarpa]	2.0e-37	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 118 - 818

Fln protein: CSYFCKSPSPPPLQRLYLQDNMLMGSVPVELADCTQMKSLDLSFNYLSGTIPASLGSLRYLQDLVMWLNKLEGVIPDELSNSQSLENLILDNNFITGNIPSSLKNCTNLVWLSLSNNR

Protein Length: 119

Fln nts: AATGTAGTTATTTTTGTAAATCACCCTCTCCACCTCCTCTGCAGAGGCTCTATCTGCAAGACAACATGTTGATGGGTTCAGTCCCTGTAGAACTTGCAGACTGCACCCAGATGAAGTCCCTTGATTTGAGTTTCAACTATCTTTCGGGTACTATTCCAGCATCGCTTGGGTCTCTTCGGTATCTTCAGGATTTGGTCATGTGGTTGAACAAGCTTGAGGGGGTAATTCCAGATGAACTTTCAAATAGCCAGAGCCTAGAGAATCTGATCCTCGACAATAATTTCATCACGGGTAATATCCCCTCTAGTCTAAAAAATTGCACCAATCTTGTATGGCTCTCTCTTTCAAACAATAGGTT

Fln Alignment:

AllPine_a_rep_c94884___LQRLYLQDNMLMGSVPVELADCTQMKSLDLSFNYLSGTIPASLGSLRYLQDLVMWLNKLEGVIPDELSNSQSLENLILDNNFITGN-----------------------------IPSSLKNCTNLVWLSLSNNR
B8LQX6________________LSLLYFEGNSLSGHIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEIGNCSSLVWLDFGNNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain