SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136270

Length: 445 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene136270
AGGCTGAATATGCTTTGTCAATTATAGATGGGTCATTCAAGTGGTCTCCTGAAGATGAAGAACTGATTCTTAATAATATAAGTTTATGTGTGAAATCTTCATCTTTCACAGCTATTGTAGGGACAGTTGGCTCAGGCAAATCCGCACTTCTATCATGCATACTTGGAGAGATGGAAAAGTCACAGGAACTGTTAAGGTGGGTGGTAGCATAGCATATGTGGCACAGTCTTCTTGGATACAAAATGGTACCATTCAAGATAACATCTTATTTGGAAAAGAATTTGACCATGTTAGATATAAGAATACTCTCAGAGTATGTGCATTGGAAAATGATCTATCTCAGATGAGATACGGTGATAAAACAGAAATTGGAGAAAGAGGTATCAATTTAAGTGGTGGACAAAAACAGCGTATCCAGTTAGCTAGAGCTTATTATCAGAATTCA

Ace file of the UniGene sp_v3.0_unigene136270 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative n=1 Tax=Ricinus communis RepID=B9SAP4_RICCO	-	-	1.0e-39	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Multidrug resistance protein ABC transporter family	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	7.516e-12	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	3.954e-40	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g07680; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_143900; CHLREDRAFT_190380; CHLREDRAFT_54676; CrMRP2;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62700.1	ATMRP10, MRP10, ABCC14 multidrug resistance-associated protein 10 chr3:23190428-23195727 REVERSE LENGTH=1539	9.99995e-41	70%
RefSeq	Arabidopsis thaliana	NP_191829.1	ABC transporter C family member 14 [Arabidopsis thaliana]	2.0e-40	70%
RefSeq	Populus trichocarpa	XP_002321011.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	8.99998e-41	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW03

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 70 - 636

Fln protein: AEYALSIIDGSFKWSPEDEELILNNISLCVKSSSFTAIVGTVGSGKSALLSCILGEMEKSQELLRWVVA*

Protein Length: 71

Fln nts: AGGCTGAATATGCTTTGTCAATTATAGATGGGTCATTCAAGTGGTCTCCTGAAGATGAAGAACTGATTCTTAATAATATAAGTTTATGTGTGAAATCTTCATCTTTCACAGCTATTGTAGGGACAGTTGGCTCAGGCAAATCCGCACTTCTATCATGCATACTTGGAGAGATGGAAAAGTCACAGGAACTGTTAAGGTGGGTGGTAGCATAGCATATGTGGCACAGTCTTCTTGGATACAAAATGGTACCATTCAAGATAACATCTTATTTGGAAAAGAATTTGACCATGTTAGATATAAGAATACTCTCAGAGTATGTGCATTGGAAAATGATCTATCTCAGATGAGATACGGTGATAAAACAGAAATTGGAGAAAGAGGTATCAATTTAAGTGGTGGACAAAAACAGCGTATCCAGTTAGCTAGAGCTTATTATCAGAATTCA

Fln Alignment:

AllPine_a_rep_c93329___ILNNISLCVKSSSFTAIVGTVGSGKSALLSCIL
A9NW03________________ILHGVSFAADPGESIAIVGPSGSGKSTIVKLIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain