SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136264

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene136264
GTCATCCACTTGGTCGGTGCATATCAAGTTTACTGCCAACCATTGTTTGCATTTATTGAAAGCTGGGCCAGCAAAACTTGGCAAGACAGTGACTTCATCAACCATCACTACATGGTGCCAGGGGCTTATTATAGGGTGAATCTGTTCAGGCTGGTGTGGAGGACAGCCTTTGTTGTGAGCACCACATTAATTTCCATGCTGCT

Ace file of the UniGene sp_v3.0_unigene136264

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HR71_POPTR	-	-	1.0e-18	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Amino acid transporter	-	-	1.149e-26	-

Source	Gene names
Sma3	AAP1; AAP2; AAP3; AAP4; AAP5; At1g10010; At1g44100; At1g77380; At5g63850; B1065E10.27; F2P24.9; GSVIVT00008237001; GSVIVT00015436001; GSVIVT00019304001; GSVIVT00019314001; GSVIVT00036108001; LeAAP2; LeAAP3; OJ1212_B02.8; Os01g0882800; Os05g0424000; OsI_04

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44100.1	AAP5 amino acid permease 5 chr1:16764651-16767223 REVERSE LENGTH=480	3.0e-22	61%
RefSeq	Arabidopsis thaliana	NP_175076.2	amino acid permease 5 [Arabidopsis thaliana]	4.0e-22	61%
RefSeq	Populus trichocarpa	XP_002312967.1	amino acid permease, partial [Populus trichocarpa]	2.0e-24	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 67 - 492

Fln protein: VIHLVGAYQVYCQPLFAFIESWASKTWQDSDFINHHYMVPGAYYRVNLFRLVWRTAFVVSTTLISML

Protein Length: 68

Fln nts: GTCATCCACTTGGTCGGTGCATATCAAGTTTACTGCCAACCATTGTTTGCATTTATTGAAAGCTGGGCCAGCAAAACTTGGCAAGACAGTGACTTCATCAACCATCACTACATGGTGCCAGGGGCTTATTATAGGGTGAATCTGTTCAGGCTGGTGTGGAGGACAGCCTTTGTTGTGAGCACCACATTAATTTCCATGCTGCT

Fln Alignment:

AllPine_a_rep_c93321___VIHLVGAYQVYCQPLFAFIESWASKTWQDSDFINHHY--MVPG-AYYRVNLFRLVWRTAFVVSTTLISML
B8LQS2________________VVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain