SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene136093

Length: 344 nt

UniGene Fasta

>sp_v3.0_unigene136093
CAAATCTCTTGTCCAATATTTGATAGAAGAACTTCATTTAATAACTCGCCTTTCAAGGAAAATGGAGGCACAGACACTTTGAGAGTTCACTCAATTAATATCAACTGTAAATAAGAAAATATTATGGATGGAGAAATGTGGCTCAGAAGCCTCTCCAGAGAGGTCATTCAGCCACATCGACCACTCATGAGAATGAAAATAAGAACCAGAGACTTGGATACTGAGGATTTATTAGAGCATTTGCCTGCCTTGCAACAATTGCTATACCGCCTTGTTGGCTGCCAGCCCGAGGGAGCGGCTGTTGGCAACTATGTCATTCAATATGCCTTGGCATTGGTCTTGAA

Ace file of the UniGene sp_v3.0_unigene136093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ANTH domain containing protein	-	-	3.0e-10	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Clathrin assembly protein, putative	-	-	8.463e-10	-

Source	Gene names
Sma3	At1g14910; At2g01600; At4g25940; At5g35200; At5g57200; F10B6.32; F20B18.50; F2I9.22; GSVIVT00009255001; GSVIVT00016968001; GSVIVT00017115001; GSVIVT00030545001; K3D20.4; MJB24.1; MtrDRAFT_AC182813g7v2; OJ1077_E05.14; OSJNBa0051O02.34; Os01g0694900; Os02g0

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	coated pit	GO:0005905	Cellular Component	-
Sma3	clathrin coat	GO:0030118	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	1-phosphatidylinositol binding	GO:0005545	Molecular Function	-
Sma3	clathrin binding	GO:0030276	Molecular Function	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	clathrin coat assembly	GO:0048268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311513.1	predicted protein [Populus trichocarpa]	3.0e-13	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 328 aas, your sequence is shorter than subject: 114 - 547

Fln protein: QISCPIFDRRTSFNNSPFKENGGTDTLRVHSININCK*ENIMDGEMWLRSLSREVIQPHRPLMRMKIRTRDLDTEDLLEHLPALQQLLYRLVGCQPEGAAVGNYVIQYALALVL

Protein Length: 115

Fln nts: CAAATCTCTTGTCCAATATTTGATAGAAGAACTTCATTTAATAACTCGCCTTTCAAGGAAAATGGAGGCACAGACACTTTGAGAGTTCACTCAATTAATATCAACTGTAAATAAGAAAATATTATGGATGGAGAAATGTGGCTCAGAAGCCTCTCCAGAGAGGTCATTCAGCCACATCGACCACTCATGAGAATGAAAATAAGAACCAGAGACTTGGATACTGAGGATTTATTAGAGCATTTGCCTGCCTTGCAACAATTGCTATACCGCCTTGTTGGCTGCCAGCCCGAGGGAGCGGCTGTTGGCAACTATGTCATTCAATATGCCTTGGCATTGGTCTTGAA

Fln Alignment:

AllPine_a_rep_c93024___NIMDGEMWLRSLS---REVIQPHRPLM----RMKIRTRDLDTEDXXXXXXXXXXXXYRLVGCQPEGAAVGNYVIQYALALV
B8LKD7________________NAWDYSAWVRSYALFLEERLECYRVLKYDIETERLRTRELDTVELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain