SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene135989

Length: 331 nt

UniGene Fasta

>sp_v3.0_unigene135989
ACTTGATGCTGGAATTGTTGCCCAGGCAGCATTGGATGTATTCACAGTAGAGCCTCCTGAGAAAGACAACAAGTTAGTCAACCATGAAAAGGTCACAGTGACACCTCATCTTGGAGCAAGCACAATGGAAGCACAGGAAGGCGTAGCTGTAGAAATTGCCGAGGCTGTTGTTGGAGCCCTGAAAGGTGAGCTTGCAGCAACAGCGGTTAATGCACCTATGGCCTATGAGCCTTGCAACTGAATGTTGCTCCATATATTCAGACATATATGGATACGGACCAGCTGATTTTCATCATCAAACAATTGAGCTTCAAGAGCCTTTGCAAGTTCT

Ace file of the UniGene sp_v3.0_unigene135989

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] emb\|CAA17552.1\| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] emb\|CAB80137.1\| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] gb\|AAL36166.1\| putative phospho	-	-	2.0e-18	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	D-3-phosphoglycerate dehydrogenase	-	-	1.792e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoglycerate dehydrogenase.	EC:1.1.1.95	-	5.557e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	5.557e-17	%
Sma3	Methane metabolism	00680	5.557e-17	%
Sma3	Metabolic pathways	01100	5.557e-17	%

Source	Gene names
Sma3	AT4g34200; At1g17745; At3g19480; At4g34200; CHLREDRAFT_78757; F11A6.8; GSVIVT00014884001; GSVIVT00025268001; GSVIVT00036649001; H0212B02.14; MLD14.22; OSIGBa0113E10.4; OSJNBb0059K02.15; Os04g0650800; Os06g0655100; Os08g0447000; OsI_17701; OsI_23958; OsI_2

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phosphoglycerate dehydrogenase activity	GO:0004617	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	L-serine biosynthetic process	GO:0006564	Biological Process	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	D-3-phosphoglycerate dehydrogenase	IPR006236	-	-
Sma3		IPR015508	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19480.1	D-3-phosphoglycerate dehydrogenase chr3:6752590-6754650 FORWARD LENGTH=588	4.0e-23	86%
RefSeq	Arabidopsis thaliana	NP_566637.2	D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana]	6.0e-23	86%
RefSeq	Populus trichocarpa	XP_002313870.1	predicted protein, partial [Populus trichocarpa]	1.0e-23	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXI5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 190 aas, your sequence is shorter than subject: 80 - 622

Fln protein: LDAGIVAQAALDVFTVEPPEKDNKLVNHEKVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMAYEPCN*

Protein Length: 81

Fln nts: ACTTGATGCTGGAATTGTTGCCCAGGCAGCATTGGATGTATTCACAGTAGAGCCTCCTGAGAAAGACAACAAGTTAGTCAACCATGAAAAGGTCACAGTGACACCTCATCTTGGAGCAAGCACAATGGAAGCACAGGAAGGCGTAGCTGTAGAAATTGCCGAGGCTGTTGTTGGAGCCCTGAAAGGTGAGCTTGCAGCAACAGCGGTTAATGCACCTATGGCCTATGAGCCTTGCAACTGAATGTTGCTCCATATATTCAGACATATATGGATACGGACCAGCTGATTTTCATCATCAAACAATTGAGCTTCAAGAGCCTTTGCAAGTTCT

Fln Alignment:

AllPine_a_rep_c92827___LDAGIVAQAALDVFTVEPPEKDNKLVNHEKVTVTPHLGASTMXXXXXXXXXXXXXXXXXLKGELAATAVNAPM
A9NXI5________________LDAGIVAQAALDVFTVEPPEKDSKLVNHEKVIVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain