SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene134478

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene134478
CGTCGTGACCTTGGCTGTCACTCATCTTGTAAGCGAATACGCTGTCTTTGGCTGTTGGTTTGCTTCGGTCCCCGCCTCCACACAACCCAACAGACTCTATGTTCATTCTGCGACTTCCCATGGAGCCACCAGCAACGATTCACTAAAGCTGATCGAGGGATATCCTCAAAAGACCATCTTCGAATCCATCGCCGAATCCGGACTCGACTTCGGTATTTACTATCAGTATCCTCCCAGCACTTTGTTCTACAGAAATCTTAGAAAGCTCAAGTATATCATC

Ace file of the UniGene sp_v3.0_unigene134478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase C [Arabidopsis thaliana] gb\|AAF01582.1\|AC009895_3 hypothetical protein [Arabidopsis thaliana] gb\|AAK59858.1\| AT3g03530/T21P5_5 [Arabidopsis thaliana] gb\|AAN28886.1\| At3g03530/T21P5_5 [Arabidopsis thaliana] dbj\|BAC22508.1\| phosphatidylglycero	-	-	2.0e-32	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	1.857e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	3.753e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.753e-08	%
Sma3	Glycerophospholipid metabolism	00564	3.753e-08	%
Sma3	Ether lipid metabolism	00565	3.753e-08	%
Sma3	Metabolic pathways	01100	3.753e-08	%

Source	Gene names
Sma3	At1g07230; At2g26870; At3g03520; At3g03530; At3g03540; At3g48610; B1139B11.14-1; F10K1.6; GSVIVT00000809001; GSVIVT00000811001; GSVIVT00017959001; GSVIVT00022270001; GSVIVT00024115001; LOC_Os03g61130; LOC_Os03g63580; LOC_Os11g38060; OJ1111_B11.8; OSJNBa00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03530.1	NPC4 non-specific phospholipase C4 chr3:842686-844970 REVERSE LENGTH=538	2.0e-40	77%
RefSeq	Arabidopsis thaliana	NP_566206.1	phospholipase C [Arabidopsis thaliana]	3.0e-40	77%
RefSeq	Populus trichocarpa	XP_002319230.1	predicted protein [Populus trichocarpa]	4.00001e-40	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVL9

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 93 - 503

Fln protein: VVTLAVTHLVSEYAVFGCWFASVPASTQPNRLYVHSATSHGATSNDSLKLIEGYPQKTIFESIAESGLDFGIYYQYPPSTLFYRNLRKLKYII

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTAAGCGAATACGCTGTCTTTGGCTGTTGGTTTGCTTCGGTCCCCGCCTCCACACAACCCAACAGACTCTATGTTCATTCTGCGACTTCCCATGGAGCCACCAGCAACGATTCACTAAAGCTGATCGAGGGATATCCTCAAAAGACCATCTTCGAATCCATCGCCGAATCCGGACTCGACTTCGGTATTTACTATCAGTATCCTCCCAGCACTTTGTTCTACAGAAATCTTAGAAAGCTCAAGTATATCATC

Fln Alignment:

AllPine_a_rep_c90500___LVSEYAVFGCWFASVPASTQPNRLYVHSATSHGATSNDSLKLIEGYPQKTIFESIAESGLDFGIYYQYPPSTLFYRNLRKLKYI
A9NVL9________________LVNEFAVFDRWFASVPASTQPNRLYVHSATSHGATSNIPKLLADGYPQKTIFESIDESGLSFGIYYEDIPATMFYRNLRKLKYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain