SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133768

Length: 346 nt

UniGene Fasta

>sp_v3.0_unigene133768
ATTGACGCCACAAATTATAAGCGTACTTATTTTGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGATGACATTGGAGCTAGATGATGAAATGACAAATGGCATTCGGAAGAGCATGTGCTAGATTTGGCCTTGGCTTGTATCTATACCATGAAGATGAGTC

Ace file of the UniGene sp_v3.0_unigene133768

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana] sp\|Q6XJG8.1\|RPN1B_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1B; AltName: Full=26S proteasome regulatory subunit RPN1 B; Short=AtRPN1b; AltName: Full=26S proteasome reg	-	-	8.0e-23	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Putative 26S proteasome regulatory subunit S2	-	-	1.219e-08	-

Source	Gene names
Sma3	AT4g28470; At2g20580; At4g28470; F20O9.150; GSVIVT00018640001; OJ1008_C03.11; Os02g0146700; OsI_05840; OsJ_05368; PHYPADRAFT_154274; PHYPADRAFT_174095; POPTRDRAFT_827164; POPTRDRAFT_832187; RCOM_1172830; RPN1a; RPN1b;

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	IPR016643	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28470.1	RPN1B, ATRPN1B 26S proteasome regulatory subunit S2 1B chr4:14067082-14072357 REVERSE LENGTH=891	5.0e-28	67%
RefSeq	Arabidopsis thaliana	NP_194576.5	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana]	6.0e-28	67%
RefSeq	Populus trichocarpa	XP_002327906.1	predicted protein [Populus trichocarpa]	6.0e-25	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 568 aas, your sequence is shorter than subject: 84 - 892

Fln protein: *RHKL*AYLFCLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQG*

Protein Length: 85

Fln nts: ATTGACGCCACAAATTATAAGCGTACTTATTTTGTTTGTACTTGACAAGCTTTGCAAGTTATGTTCCAGGACCTGATGACATGTTAGTCCTCGACATAGCTTATTCAATTTATACAAAATTTGGAGAATACACAAATGCACTTAGAGTGGCCTTATGTATGCACAACATGCAGTATGTGAAGGCCATATTCACTGCTTGTGTAGATCCTCTTCAGAAGAAGCAGCTCTGCTACATTTTGGCCCGACAGGGATGACATTGGAGCTAGATGATGAAATGACAAATGGCATTCGGAAGAGCATGTGCTAGATTTGGCCTTGGCTTGTATCTATACCATGAAGATGAGTC

Fln Alignment:

AllPine_a_rep_c89408___CLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNMQYVKAIFTACVDPLQKKQLCYILARQG
B8LRR7________________CLYLTSFASYVPGPDDMLVLDIAYSIYTKFGEYTNALRVALCMHNLQYVKAIFTACVDPLQKKQLCYILARQG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain