SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133490

Length: 367 nt

UniGene Fasta

>sp_v3.0_unigene133490
ATGGGGTTTTTGGTTGAAGCACAAACTTGTGGTAAAGACTCGGGAACTGTACGGAGATATGTTCATGCTCAACTCTCAGTTCCATTAATGAGAACTGAATAAGGAAAGCGTCCACAAAGACGCCGAGTTTTATGATTGCGCTCTGTGCTGTGCAGTAGACAAAAGATCTTCTGAAGAAAGCTTGGAATCAAGAGTGGCATCATGCCGAAATATGAATTGGAAGTATTAAGTGCTCTGGACGAGGCAAGATTGCAGTTATACCACTTTACTGCCATCGTTATTGCAGGGATGGGCTTCTTCACGGATGCCTATGACCTGTTCTGCATCTCCACCGTCACTAGGCTCCTTGGAAGGATTTATTAACATT

Ace file of the UniGene sp_v3.0_unigene133490

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	81%
Sma3	H(+)/Pi cotransporter	-	-	-

Source	Gene names
Sma3	5K14.7; APT1; APT2; At1g76430; At2g32830; At2g38940; At3g54700; At5g43340; At5g43350; At5g43360; At5g43370; EcPT1; EcPT2; EdPT1; F14G6.3; F15M4.7; F24L7.3; GSVIVT00002927001; GSVIVT00006480001; GSVIVT00006481001; GSVIVT00020254001; GSVIVT00020255001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G38940.1	" ATPT2, PHT1;4 phosphate transporter 1;4 chr2:16258500-16260104 FORWARD LENGTH=534"	1.0e-20	74%
RefSeq	Arabidopsis thaliana	NP_181428.1	inorganic phosphate transporter 1-4 [Arabidopsis thaliana]	2.0e-20	74%
RefSeq	Populus trichocarpa	XP_002302047.1	high affinity inorganic phosphate transporter [Populus trichocarpa]	3.0e-21	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 489 aas, your sequence is shorter than subject: 54 - 544

Fln protein: MPKYELEVLSALDEARLQLYHFTAIVIAGMGFFTDAYDLFCISTVTRLLGRIY*

Protein Length: 55

Fln nts: ATGGGGTTTTTGGTTGAAGCACAAACTTGTGGTAAAGACTCGGGAACTGTACGGAGATATGTTCATGCTCAACTCTCAGTTCCATTAATGAGAACTGAATAAGGAAAGCGTCCACAAAGACGCCGAGTTTTATGATTGCGCTCTGTGCTGTGCAGTAGACAAAAGATCTTCTGAAGAAAGCTTGGAATCAAGAGTGGCATC_-_ATGCCGAAATATGAATTGGAAGTATTAAGTGCTCTGGACGAGGCAAGATTGCAGTTATACCACTTTACTGCCATCGTTATTGCAGGGATGGGCTTCTTCACGGATGCCTATGACCTGTTCTGCATCTCCACCGTCACTAGGCTCCTTGGAAGGATTTATTAACATT

Fln Alignment:

AllPine_a_rep_c88863___MPKYELEVLSALDEARLQLYHFTAIVIAGMGFFTDAYDLFCISTVTRLLGRIY
Q1XG57________________MAKTQLEVLNALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISTVTKLLGRIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain