SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene133162

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene133162
CATCCTCGTTGTCTGCACCGACTCCATATAACCGTTCGGTCACAGGGGTTTCGAAGCCGGCGGAGTACGTGATATCGAAGCTCGATGCCCTTGTGAATTGGGCGAGGAAGGGATCCATTTGGCCCATGACATTTGGCCTTGCATGTTGTGCGGTGGAGGTGATGCACACTGGTGCAGCTCGCTATGATTTAGACAGGTTTGGAATAATTTTCAGGCCCAGTCCAAGGCAGTCTGACTGCATGATCGTTGCAGGAACTCTTACGAACAAGATGGCGGAGGTTATTATCACTACTCATATTCTGTTGTGCGCGGTTGTGATCGAATTGTTCCAGTTGACATCTATGTGCCAGGCTGCCCACCTACTG

Ace file of the UniGene sp_v3.0_unigene133162 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus]	-	-	9.94922e-44	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	NADH dehydrogenase subunit 10	-	-	6.246e-20	-

Source	Gene names
Sma3	118K20.2; At5g11770; CHLREDRAFT_139850; GSVIVT00032166001; HAM_031; LOC_Os03g30610; MicpuC_mit24; NUO10; OSJNBa0053E05.16; OSJNBb0028K20.18; Os01g0720300; Os05g0533700; OsI_03544; OsI_06904; OsI_12075; OsI_20756; OsI_24684; OsJ_03280; OsJ_11297; OsJ_19328

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	respiratory chain complex I	GO:0045271	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH	GO:0016651	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	IPR006137	-	-
Sma3	NADH-ubiquinone oxidoreductase, 20 Kd subunit	IPR006138	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-
Sma3	[NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB	IPR014406	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11770.1	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial chr5:3791148-3792929 REVERSE LENGTH=218	1.4013e-45	72%
RefSeq	Arabidopsis thaliana	NP_196738.1	NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis thaliana]	1.4013e-45	72%
RefSeq	Populus trichocarpa	XP_002308574.1	predicted protein [Populus trichocarpa]	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE1

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 121 - 205

Fln protein: SSLSAPTPYNRSVTGVSKPAEYVISKLDALVNWARKGSIWPMTFGLACCAVEVMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAEVIITTHILLCAVVIELFQLTSMCQAAHLL

Protein Length: 122

Fln nts: CATCCTCGTTGTCTGCACCGACTCCATATAACCGTTCGGTCACAGGGGTTTCGAAGCCGGCGGAGTACGTGATATCGAAGCTCGATGCCCTTGTGAATTGGGCGAGGAAGGGATCCATTTGGCCCATGACATTTGGCCTTGCATGTTGTGCGGTGGAGGTGATGCACACTGGTGCAGCTCGCTATGATTTAGACAGGTTTGGAATAATTTTCAGGCCCAGTCCAAGGCAGTCTGACTGCATGATCGTTGCAGGAACTCTTACGAACAAGATGGCGGAGGTTATTATCACTACTCATATTCTGTTGTGCGCGGTTGTGATCGAATTGTTCCAGTTGACATCTATGTGCCAGGCTGCCCACCTACTG

Fln Alignment:

AllPine_a_rep_c88243___SSLSAPTPYNRSVTGVSKPAEYVISKLDALVNWARKGSIWPMTFGLACCAVEVMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAEVI
C0PQE1________________SSLSAPTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain