SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132995

Length: 449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene132995
AGCCCTCCCTCATACCTGTCTGGAGAGTTCCCCGGTGACTACGGATGGGACACAGCCGGACTCTCAGCAGACCCCGAGACCTTCGCCCGCTACCGCGAGATCGAGGTCATCCACGCTCGCTGGGCCATGCTTGGAGCCCTGGGCTGCATAGTGCCAGAGCTGCTGGACGGACAAACCATGTGGCCTGGTGGCAGGCGGGAGCCACCATCTTCGACAAGAAGGGCATCCAGTACCTGGGCGTTCCCGGCCTCATCAAGCCAAGTCCATCATCGCCACCCTCCTCGTGCAGGTCATCCTCATGGGAGCCATCGAGGGCTACCGTGTGAACGGCGGACCCGCTGGAGAGGGCCTGGACAAGGTGTACCCCGGAGAGGCCTTCGACCCCCTGGGCTTGGCTGACGACCCCGACACCTTCGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGGC

Ace file of the UniGene sp_v3.0_unigene132995 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Major light-harvesting complex II protein m10 n=1 Tax=Chlamydomonas reinhardtii RepID=Q8S3U0_CHLRE	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	LHCP	-	-	2.464e-23	-

Source	Gene names
Sma3	AB80; ABC; CAB; CAB-151; CAB-M9; CAB1; CAB1R; CAB21; CAB215; CAB25; CAB2R; CAB3; CAB36; CAB37; CAB3C; CAB4; CAB40; CAB5; CAB7; CAB8; CABC; CABF3; CARCAB1; CBP2; CBP5; CHLREDRAFT_184067; CHLREDRAFT_184071; CHLREDRAFT_184479; CHLREDRAFT_184490; CHLREDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	photosystem II	GO:0009523	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	chlorophyll binding	GO:0016168	Molecular Function	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G05070.1	LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 chr2:1799436-1800329 REVERSE LENGTH=265	70%
RefSeq	Arabidopsis thaliana	NP_178585.1	photosystem II light harvesting complex protein 2.1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301582.1	light-harvesting complex II protein Lhcb2 [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLB8

Fln msg: Separated hits, possible frame ERROR between 183 and 257, Distance to subject end: 48 aas, your sequence is shorter than subject: 150 - 266

Fln protein: SPPSYLSGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCIVPELLDGQTMxxxxxxxxxxxxxxxxxxxxxxxxxxAKSIIATLLVQVILMGAIEGYRVNGGPAGEGLDKVYPGEAFDPLGLADDPDTFAELKVKEIKNG

Protein Length: 151

Fln nts: AGCCCTCCCTCATACCTGTCTGGAGAGTTCCCCGGTGACTACGGATGGGACACAGCCGGACTCTCAGCAGACCCCGAGACCTTCGCCCGCTACCGCGAGATCGAGGTCATCCACGCTCGCTGGGCCATGCTTGGAGCCCTGGGCTGCATAGTGCCAGAGCTGCTGGACGGACAAACCATGTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCAAGTCCATCATCGCCACCCTCCTCGTGCAGGTCATCCTCATGGGAGCCATCGAGGGCTACCGTGTGAACGGCGGACCCGCTGGAGAGGGCCTGGACAAGGTGTACCCCGGAGAGGCCTTCGACCCCCTGGGCTTGGCTGACGACCCCGACACCTTCGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGGC

Fln Alignment:

AllPine_a_c87898___PSYLSGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCIVPELLD------GQTMWxxxxxxxxxxxxxxxxxxxxxxxxxAKSIIATLLVQVILMGAIEGYRVNGGPAGEGLDKVYPGEAFDPLGLADDPDTFAELKVKEIKNG
A9NLB8________________PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWxxxxxxxxxxxxxxxxxxxxxxxxxAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain