SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132770

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene132770
CGTCGTGACCTTGGCTGTCACTCAATCCGAGTACACAGTCGAGCAATAATCCTTTATTTGTTGGTATCCTGTGTCCCAGAGAAAGATTTCCGGAGAAGTATGTTGCAGTTTTGTCCTCTGTTCCTACTGTTTTGCACCCTGGAGCATGTGTACTAGTAGTGGGAAAGCAGAGT

Ace file of the UniGene sp_v3.0_unigene132770

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CytochromB561_N domain containing protein	-	-	1.0e-09	44%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	70%

Source	Gene names
Sma3	At1g07970; GSVIVT00024503001; LOC_Os03g17950; Os03g0288800; OsI_11095; OsJ_10435; POPTRDRAFT_650424; RCOM_1400450; VITISV_033335;

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome B561-related	IPR019176	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07970.1	" CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI	2.0e-18	66%
RefSeq	Arabidopsis thaliana	NP_172275.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-18	66%
RefSeq	Populus trichocarpa	XP_002314263.1	predicted protein [Populus trichocarpa]	8.0e-20	70%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9HQ86

Fln msg: Distance to subject end: 63 aas, atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 55 - 121

Fln protein: PWLSLNPSTQSSNNPLFVGILCPRERFPEKYVAVLSSVPTVLHPGACVLVVGKQS

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGAGTACACAGTCGAGCAATAATCCTTTATTTGTTGGTATCCTGTGTCCCAGAGAAAGATTTCCGGAGAAGTATGTTGCAGTTTTGTCCTCTGTTCCTACTGTTTTGCACCCTGGAGCATGTGTACTAGTAGTGGGAAAGCAGAGT

Fln Alignment:

AllPine_a_rep_c87459___NPSTQSSNNPLFVGILCPRERFPEKYVAVLSSVPTVLHPGACVLVVGKQS
B9HQ86________________NAGAQSSKNPLFLGVLPPRERFPEKYISVISSAPSMLHPGALVLAVGKQS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain