SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene132024

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene132024
CGTCGTGACCTTGGCTGTCACTCATTATTCTCAGTTTCTAGAATCCTACAAGAGTGTAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATTGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACTAGGCCGGATAGACTAAAAATGACTCTCTATCAAGCTAACTATCAAA

Ace file of the UniGene sp_v3.0_unigene132024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable 26S proteasome regulatory subunit (Fragment) n=11 Tax=Spermatophyta RepID=Q30HZ5_9CONI	-	-	2.0e-22	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	26S proteasome subunit RPN7	-	-	2.953e-09	-

Source	Gene names
Sma3	At4g24820; CHLREDRAFT_182738; F6I7.30; GSVIVT00010470001; H0805A05.13; LOC_Os04g40850; MICPUCDRAFT_44063; MICPUN_109050; OJ000223_09.5; OJ1791_B03.16; OSJNBa0081L15.15; OSTLU_16772; Os02g0600100; Os04g0485000; OsI_07934; OsI_16374; OsJ_25897; Ot09g02140;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24820.1	" 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain chr4:12790471-12792599 REVERSE LENGTH=387"	7.0e-27	90%
RefSeq	Arabidopsis thaliana	NP_567709.1	26S proteasome regulatory subunit N7 [Arabidopsis thaliana]	9.0e-27	90%
RefSeq	Populus trichocarpa	XP_002321676.1	predicted protein [Populus trichocarpa]	6.0e-26	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT48

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 16 aas, your sequence is shorter than subject: 63 - 386

Fln protein: VVTLAVTHYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETN*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTCTCAGTTTCTAGAATCCTACAAGAGTGTAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATTGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACTAGGCCGGATAGACTAAAAATGACTCTCTATCAAGCTAACTATCAAA

Fln Alignment:

AllPine_a_rep_c85909___YSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETN
A9NT48________________YSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain