SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131875

Length: 311 nt

UniGene Fasta

>sp_v3.0_unigene131875
CGTCGTGACCTTGGCTGTCACTCAAGCGTGTGGGTGAAAAGTTACACACTGTTGCAAAAAGTGCCGATATGCGTCATCGTGTGTGGGTCGAGATTGCAGACCGATTGGTAGCTGGTTTTCTTGAGAAGTTTGAGGAGGGCTGTCATTTAATGCATTCAGAATGAAGATGCTGGTACCTTGCCAACACCCTATGGATTTCATCCTCTCTCCCTAGGGTTTCTGGAATAAGGGTGATATTAACTTCCAGTTGCAATAACAGCTGGCAACCCTGCAAGATTCGGCAGGAATGGATCTGATGACCTCACTGGGCA

Ace file of the UniGene sp_v3.0_unigene131875

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP:phosphorylcholine cytidylyltransferase [Arabidopsis thaliana] dbj\|BAC01277.1\| CTP:phosphorylcholine cytidylyltransferase [Arabidopsis thaliana]	-	-	7.0e-08	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	PHYPADRAFT_33429;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	2.0e-11	63%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	2.0e-11	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEI5

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 26 aas, your sequence is shorter than subject: 54 - 305

Fln protein: S*PWLSLKRVGEKLHTVAKSADMRHRVWVEIADRLVAGFLEKFEEGCHLMHSE*

Protein Length: 55

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCGTGTGGGTGAAAAGTTACACACTGTTGCAAAAAGTGCCGATATGCGTCATCGTGTGTGGGTCGAGATTGCAGACCGATTGGTAGCTGGTTTTCTTGAGAAGTTTGAGGAGGGCTGTCATTTAATGCATTCAGAATGA___AGATGCTGGTACCTTGCCAACACCCTATGGATTTCATCCTCTCTCCCTAGGGTTTCTGGAATAAGGGTGATATTAACTTCCAGTTGCAATAACAGCTGGCAACCCTGCAAGATTCGGCAGGAATGGATCTGATGACCTCACTGGGCA

Fln Alignment:

AllPine_a_rep_c85602___KRVGEKLHTVAKSADMRHRVWVEIADRLVAGFLEKFEEGCHLMHS
D5AEI5________________ERVGEKLHTVAKSADMHHRVWVENADRLVAGFLEKFEEGCHLMEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain