SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131397

Length: 562 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene131397
GGTATGCCCAAGGAATAATTTTCCAACATGTGAGGATGACTAATGTCGCGAATCCCATTATTATCGACCAATATTACTGTGCCCCTCCATCGCCATGTCACAATCAGCAGATAAAACCATGCAACAATCATAGTTCCGCTGTTCGAGTTCACAACGTGACATACATAGATATCACTGGCACTTCGGCAACGAAAGAAGCAATAAAACTTGAGTGCAGCGGGAGCGTTCCATGTACAAAAATTGTGATGGAGGGTATAAGACTCCGCTTGGATAATGGAGACCCGGCCACTTCTTTCTCGGATAATGTTCAAGGTTCAAGCGATGGCCAAGTCATTCCTCCCGTTAAATTCACGTTACCGGGATTGGAAGCAACAGATTGATTTGTTACTGCGAGTCATCGGTCCTTTCATTGGCTTTGCAATTATCTAGGTCGGCCCCATGGTGGTGGGCACATCCAGTTTTTAGCGTGACAAAATATTTAAAACGAAGTTGAAAATTATATGTGAATAGCAATGTGATAAGTTCAGAAAAAAATCCTGACAAACACTAATATTGATAATAC

Ace file of the UniGene sp_v3.0_unigene131397 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase (Fragment) n=2 Tax=Musa acuminata RepID=A9UFC8_MUSAC	-	-	2.0e-22	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	At1g80170; F18B13.25; PG;

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80170.1	Pectin lyase-like superfamily protein chr1:30153646-30155683 REVERSE LENGTH=444	2.0e-27	49%
RefSeq	Arabidopsis thaliana	NP_565232.1	putative polygalacturonase [Arabidopsis thaliana]	2.0e-27	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0V2

Fln msg: your sequence is shorter than subject: 126 - 429

Fln protein: YAQGIIFQHVRMTNVANPIIIDQYYCAPPSPCHNQQIKPCNNHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGIRLRLDNGDPATSFSDNVQGSSDGQVIPPVKFTLPGLEATD*

Protein Length: 127

Fln nts: GGTATGCCCAAGGAATAATTTTCCAACATGTGAGGATGACTAATGTCGCGAATCCCATTATTATCGACCAATATTACTGTGCCCCTCCATCGCCATGTCACAATCAGCAGATAAAACCATGCAACAATCATAGTTCCGCTGTTCGAGTTCACAACGTGACATACATAGATATCACTGGCACTTCGGCAACGAAAGAAGCAATAAAACTTGAGTGCAGCGGGAGCGTTCCATGTACAAAAATTGTGATGGAGGGTATAAGACTCCGCTTGGATAATGGAGACCCGGCCACTTCTTTCTCGGATAATGTTCAAGGTTCAAGCGATGGCCAAGTCATTCCTCCCGTTAAATTCACGTTACCGGGATTGGAAGCAACAGATTGA___TTTGTTACTGCGAGTCATCGGTCCTTTCATTGGCTTTGCAATTATCTAGGTCGGCCCCATGGTGGTGGGCACATCCAGTTTTTAGCGTGACAAAATATTTAAAACGAAGTTGAAAATTATATGTGAATAGCAATGTGATAAGTTCAGAAAAAAATCCTGACAAACACTAATATTGATAATAC

Fln Alignment:

AllPine_a_rep_c84719___YAQGIIFQHVRMTNVANPIIIDQYYCAPPSPCHNQQIKPCNNHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGIRLRLDNGDPATSFSDNVQGSSDGQVIPPVKFTLPGL
A9P0V2________________YAQGIIFQHVKMINVSNPIIINQNYCAPSSSCQNQPTTICNNQSSAVQVNNVTYTDITGTSATQDAIKLACSATAPCTNIVLEDISLQLSNGDTASSLSANVQGSSNGQVAPPVNFSSPSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain