SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene131262

Length: 444 nt

UniGene Fasta

>sp_v3.0_unigene131262
ATGGGTTGAGAATGATATCTTGTTTGAAAACAAGAGAAATATTATTATTGTGGATGATTTGGTACCGAACGACATTAGCTCCACTAAAATTAGGCAAAACTTGACCAGAGGACTGTCGGTGAAGTACTTGACACCAGACACTGTGATTGACTACATCAAGCAACACAAATTATATGTCAATCATTCAAAGTAAACGAAACTGCTAAGCATGCATTTTTGTATTTGTATAAGGTACTAGCTGAAGTAGCCAGACCATCGGCGAGGATGTTTTGACCTCTAGGGACCAAAAACAAGTTATACTCAATGAAAGATTCAAGAAAATCCAAAACAACATTCCTATAGGCCCCTTAACCTTGGGTGTTTGGCAGAGTATTCCCGTTAATCTGTTTTATTATTAGTTTAGAGTCCCCATGAATTAAAATTTTCTTGGCTCCTAGCTTCTTT

Ace file of the UniGene sp_v3.0_unigene131262

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nicotinamide/nicotinic acid mononucleotide adenylyltransferase [Saccharomyces cerevisiae YJM789] gb\|EDV10227.1\| nicotinamide [Saccharomyces cerevisiae RM11-1a] gb\|EEU08795.1\| Nma2p [Saccharomyces cerevisiae JAY291] emb\|CAY79770.1\| Nma2p [Saccharomyces cer	-	-	4.0e-12	49%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	58%

Source	Gene names
Sma3	AT5G55810; At5g55810; At5g55810/MDF20.25; GSVIVT00033380001; PHYPADRAFT_156294; PHYPADRAFT_93376; POPTRDRAFT_812149; POPTRDRAFT_893025; RCOM_0521840;

Source	GOs	Term	Type	Identity
Sma3	nicotinamide-nucleotide adenylyltransferase activity	GO:0000309	Molecular Function	-
Sma3	nicotinate-nucleotide adenylyltransferase activity	GO:0004515	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	NAD biosynthetic process	GO:0009435	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Probable nicotinate-nucleotide adenylyltransferase	IPR005248	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55810.2	-	3.0e-16	63%
RefSeq	Arabidopsis thaliana	NP_200392.3	nicotinamide mononucleotide adenylyltransferase [Arabidopsis thaliana]	4.0e-16	63%
RefSeq	Populus trichocarpa	XP_002319013.1	predicted protein [Populus trichocarpa]	4.0e-17	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9TJ12

Fln msg: your sequence is shorter than subject: 64 - 246

Fln protein: WVENDILFENKRNIIIVDDLVPNDISSTKIRQNLTRGLSVKYLTPDTVIDYIKQHKLYVNHSK*

Protein Length: 65

Fln nts: ATGGGTTGAGAATGATATCTTGTTTGAAAACAAGAGAAATATTATTATTGTGGATGATTTGGTACCGAACGACATTAGCTCCACTAAAATTAGGCAAAACTTGACCAGAGGACTGTCGGTGAAGTACTTGACACCAGACACTGTGATTGACTACATCAAGCAACACAAATTATATGTCAATCATTCAAAGTAA___ACGAAACTGCTAAGCATGCATTTTTGTATTTGTATAAGGTACTAGCTGAAGTAGCCAGACCATCGGCGAGGATGTTTTGACCTCTAGGGACCAAAAACAAGTTATACTCAATGAAAGATTCAAGAAAATCCAAAACAACATTCCTATAGGCCCCTTAACCTTGGGTGTTTGGCAGAGTATTCCCGTTAATCTGTTTTATTATTAGTTTAGAGTCCCCATGAATTAAAATTTTCTTGGCTCCTAGCTTCTTT

Fln Alignment:

AllPine_a_rep_c84434___ENDILFENKRNIIIVDDLVPNDISSTKIRQNLTRGLSVKYLTPDTVIDYIKQHKLYVNHS
A9TJ12________________EHDILYNNQRQILVVDEIIQNTISATAVRRNLARGLSVKYLIPDSVINHIKMHNLYMNAS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
201		33		66	0.997454
295		33		66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain