SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130300

Length: 340 nt

UniGene Fasta

>sp_v3.0_unigene130300
CAAAGATATTTGCAGAAGCACCTTTGAGATTAAGATCAGGAATTTTATTGTATGGCCCCCCTGGGTGTGGGAAAACCCACATTGTTGGTGCTGCTGCTGCTGCCTGTTCTTTGCGATTTATCTCTGTGAAAGGACCTGAGCTGCTAAACAAATATATTGGAGCATCAGAACAAGCTGTCCGAGATATATTCTCTAAAGCATCTGCAGCGGCTCCATGCTATTTTATTTTTGATGAATTTGACTCTATTGCTCCAAAAAGGGGACATGACAACACTGGCGTAACAGATCGGGTTGTCAATCAGCTGTTGACTGAACTTGATGGTGTTGAAGCATTGACTGG

Ace file of the UniGene sp_v3.0_unigene130300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxisome biogenesis protein 1 n=2 Tax=Arabidopsis RepID=PEX1_ARATH	-	-	0.0	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Cell division cycle protein 48	-	-	2.33e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	1.207e-13	-

Source	Gene names
Sma3	AT3G09840; At1g03000; At3g01610; At3g09840; At3g53230; At3g56690; At5g03340; CAFP; CDC48; CDC48A; CDC48C; CDC48D; CDC48E; CHLREDRAFT_103983; CHLREDRAFT_113394; CHLREDRAFT_120247; CHLREDRAFT_134171; CHLREDRAFT_38371; EMB1354; F10O3.18; F12E4_70; F4P13.15;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	-
Sma3	peroxisome organization	GO:0007031	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	protein import into peroxisome matrix	GO:0016558	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08470.1	PEX1 peroxisome 1 chr5:2735925-2742731 FORWARD LENGTH=1130	91%
RefSeq	Arabidopsis thaliana	NP_196464.2	peroxisome 1 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002298113.1	predicted protein, partial [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACE6

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 112 - 442

Fln protein: KIFAEAPLRLRSGILLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKASAAAPCYFIFDEFDSIAPKRGHDNTGVTDRVVNQLLTELDGVEALT

Protein Length: 113

Fln nts: CAAAGATATTTGCAGAAGCACCTTTGAGATTAAGATCAGGAATTTTATTGTATGGCCCCCCTGGGTGTGGGAAAACCCACATTGTTGGTGCTGCTGCTGCTGCCTGTTCTTTGCGATTTATCTCTGTGAAAGGACCTGAGCTGCTAAACAAATATATTGGAGCATCAGAACAAGCTGTCCGAGATATATTCTCTAAAGCATCTGCAGCGGCTCCATGCTATTTTATTTTTGATGAATTTGACTCTATTGCTCCAAAAAGGGGACATGACAACACTGGCGTAACAGATCGGGTTGTCAATCAGCTGTTGACTGAACTTGATGGTGTTGAAGCATTGACTGG

Fln Alignment:

AllPine_a_rep_c82366___GILLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKASAAAPCYFIFDEFDSIAPKRGHDNTGVT--DRVVNQLLTELDGV
D5ACE6________________GVLMFGPPGCSKTIMARAVASEAGLNFLAVKGPELFSKWVGESEKAIQSLFAKARAAAPSIIFFDEIDGLAVAREHSSGAISVGDRVMSQLLVEMDGL

SSRs (tot: 1)

Start position	End position	Sequence	Length
89	103	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain