SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129974

Length: 159 nt

UniGene Fasta

>sp_v3.0_unigene129974
ATGGCTTGTGGTGTCTAGTGTTATGTTGTTGCAATCTAGTGATGCACACAACTATATGAAGCGCCCACTCCCAAAGCCATGTAGGAATCTGGTGTTGTATTTCCACGATGTAATCTACAATGGCCTCAACGCCATGAACGCTACTTCTACGCTTGTGGG

Ace file of the UniGene sp_v3.0_unigene129974

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dirigent-like protein n=5 Tax=Picea RepID=A6YR09_PICSI	-	-	2.0e-11	82%
FL-Next	tr=Dirigent protein pDIR2; Picea engelmannii x Picea glauca.	-	-	0.0	84%
Sma3	Dirigent-like protein	-	-	3.12e-35	-

Source	Gene names
Sma3	DIR9; psd_Th1; psd_Th2; psd_Tp3; psd_Tp5; psd_Tp6; psd_Tp7; psd_Tp8;

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant disease resistance response protein	IPR004265	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002304532.1	predicted protein [Populus trichocarpa]	6.0e-11	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q27JB0

Fln msg: Distance to subject end: 128 aas, atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 45 - 195

Fln protein: MLLQSSDAHNYMKRPLPKPCRNLVLYFHDVIYNGLNAMNATSTLV

Protein Length: 46

Fln nts: ATGGCTTGTGGTGTCTAGTGTT_-_ATGTTGTTGCAATCTAGTGATGCACACAACTATATGAAGCGCCCACTCCCAAAGCCATGTAGGAATCTGGTGTTGTATTTCCACGATGTAATCTACAATGGCCTCAACGCCATGAACGCTACTTCTACGCTTGTGGG

Fln Alignment:

AllPine_a_rep_c81620___DAHNYMKRPLPKPCRNLVLYFHDVIYNGLNAMNATSTLV
Q27JB0________________DGHSWKKHPLPKPCRNLVLYFHDVIYNGLNADNATSTLV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
56	75		25		0.996474
57			25	75	0.996474
64		75		25	0.996474
96		33		66	0.997452
126		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain