SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129560

Length: 382 nt

UniGene Fasta

>sp_v3.0_unigene129560
CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Ace file of the UniGene sp_v3.0_unigene129560

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase 2 [Musa acuminata AAA Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Pectate lyase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectate lyase.	EC:4.2.2.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		0.0	%

Source	Gene names
Sma3	9612; AT3G01270; AT59; At1g04680; At1g11920; At1g14420; At1g30350; At1g67750; At2g02720; At3g01270; At3g07010; At3g24230; At3g24670; At3g27400; At3g53190; At3g54920; At4g13210; At4g13710; At4g22080; At4g22090; At4g24780; At5g09280; At5g15110; At5g48900; A

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pectate lyase activity	GO:0030570	Molecular Function	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24670.1	Pectin lyase-like superfamily protein chr3:9006205-9008801 REVERSE LENGTH=440	76%
RefSeq	Arabidopsis thaliana	NP_189110.1	pectate lyase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002301766.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQH9

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 127 - 429

Fln protein: ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN

Protein Length: 128

Fln nts: CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Fln Alignment:

AllPine_a_rep_c80705___ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN
B8LQH9________________AIRGSTAITISNSYFTHHNEVMLLGHHDNYTADVHMQVTIAFNHFGEDLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPENRWAKEVTKRVNENKDEWKKWNWRSEGDMMLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain