SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129551

Length: 437 nt

UniGene Fasta

>sp_v3.0_unigene129551
AGCTATTGGTCTCATGCAGCTTCTTCTTGTTCTGAATTTGTGTGATAATTATCTTACTGGAACAATTCCTCCTATCCTAGGCAACTTGGATGAAACTCTACATTTGGATTTGTCGGGTAATAATCTCACAGGATCTATTCCACCAGAGTTGGGAAACATGAAAAGTCTCGAGTCCTTGTAAGGATTTAAATTACACCTTTTGTTGTGTGTTCTAATATGTAACATAATTTGTATTTGCATGATAAGAAAGAGCCATGCTCATATGGTTATGCATGCATCTACATGGTAATCAACTTACAGGACAAATTCCACCTGGGATGGGGAAGTTGGAAAACTTGATTCATTTGTAAGTTTGTGTCTATACATTTGTGAAAAAGTGGACACAAAAATGATCAAAAATCTCAAAACCTAATTATACACTAACATTATTCATTGAT

Ace file of the UniGene sp_v3.0_unigene129551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative leucine-rich repeat protein n=1 Tax=uncultured marine microorganism HF4000_ANIW141I9 RepID=B3T5G0_9ZZZZ	-	-	5.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Leucine-rich repeat protein kinase	-	-	2.068e-10	-

Source	Gene names
Sma3	AT2G26330; AT5G07180; AT5G62230; At2g26330; At5g07180; ER; ERECTA; ERL1; ERL2; ERL2a; ERL2b; GSVIVT00032282001; GSVIVT00038499001; LOC_Os11g31560; LRR-RLK; OSJNBa0016O19.39; Os06g0130100; Os06g0203800; Os11g0514700; OsI_09151; OsI_21484; OsI_22078; OsI_36

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell adhesion	GO:0030155	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07180.1	ERL2 ERECTA-like 2 chr5:2227787-2233232 REVERSE LENGTH=967	6.0e-12	68%
RefSeq	Arabidopsis thaliana	NP_196335.2	LRR receptor-like serine/threonine-protein kinase ERL2 [Arabidopsis thaliana]	7.0e-12	68%
RefSeq	Populus trichocarpa	XP_002309462.1	leucine-rich repeat protein kinase [Populus trichocarpa]	3.0e-11	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV1

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 438 aas, your sequence is shorter than subject: 117 - 607

Fln protein: AIGLMQLLLVLNLCDNYLTGTIPPILGNLDETLHLDLSGNNLTGSIPPELGNMKSLESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMHLHGNQLTGQIPPGMGKLENLIHL*

Protein Length: 118

Fln nts: AGCTATTGGTCTCATGCAGCTTCTTCTTGTTCTGAATTTGTGTGATAATTATCTTACTGGAACAATTCCTCCTATCCTAGGCAACTTGGATGAAACTCTACATTTGGATTTGTCGGGTAATAATCTCACAGGATCTATTCCACCAGAGTTGGGAAACATGAAAAGTCTCGAGTCCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATGCATCTACATGGTAATCAACTTACAGGACAAATTCCACCTGGGATGGGGAAGTTGGAAAACTTGATTCATTTGTAAGTTTGTGTCTATACATTTGTGAAAAAGTGGACACAAAAATGATCAAAAATCTCAAAACCTAATTATACACTAACATTATTCATTGAT

Fln Alignment:

AllPine_a_rep_c80682___TGTIPPILGNLDETLHLDLSGNNLTGSIPPELGNMKSLESLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMHLHGNQLTGQIPPGMGKLENLIHL
B8LLV1________________SGIISPRIGQLTFLTYLTLEGNSLTGEIPPQLGNMTSLQNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNLASNQLTGEIPNTLGQLDNLQYL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
217	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain