SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129455

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene129455
CGTCGTGACCTTGGCTGTCACTCAATTTTTAACATTGGCTGTGCTGGGCGAAGTGGAGGAAGAGGAGGAGCAGCAGCAACTACAAGACGAAGAGTTTGAGCAGCAGACCATCCGTTCATCATGGGGCGTATGCACAGTCGAGGAAAAGGTATTTCCTCTTCGGCACTACCGTACAAGAGGACTCCCCCAAGTTGGTTGAAGATTTCATCTCAAGATGTCGAAGATAATATTTGCAAGTTTGCCAAGAGAGGTTTGACGCCATCACAAATTGGTGTGATTCTCCGTGACTCCCATGGAATTGCACTCTCGTGGCTTAAGATTTTTCTCATCATTGTGAACAACAATTATGGAGTCATTTCTTATGTGGGGTATTGCAAGAGCTACTGATTGTTGCTGTAGAAGCTGATTAGACTTTTACAGAAGTACATCAATTATGTTCACCGGATTTTAGTGTTCCTTGTTTTAAGTCTTGACAATTTCGGAGTATTGAATGTTGGGG

Ace file of the UniGene sp_v3.0_unigene129455

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S13, putative n=1 Tax=Ricinus communis RepID=B9R9P3_RICCO	-	-	7.0e-27	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	40S ribosomal protein S13	-	-	1.495e-14	-

Source	Gene names
Sma3	ACI39; At3g60770; At4g00100; CHLREDRAFT_169450; F6N15.7; GSVIVT00026373001; GSVIVT00038451001; LOC_Os08g02400; LOC_Os08g02410; MICPUCDRAFT_49744; MICPUN_108906; OJ1699_E05.12; OSTLU_40147; Os07g0572900; Os08g0117200; Os08g0117300; OsI_08460; OsI_26563; Os

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Ribosomal protein S13/S15, N-terminal	IPR012606	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00100.1	ATRPS13A, RPS13, PFL2, RPS13A ribosomal protein S13A chr4:37172-38123 FORWARD LENGTH=151	1.0e-30	85%
RefSeq	Arabidopsis thaliana	NP_567151.1	40S ribosomal protein S13-2 [Arabidopsis thaliana]	2.0e-30	85%
RefSeq	Populus trichocarpa	XP_002322414.1	predicted protein [Populus trichocarpa]	1.0e-34	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRB2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 89 - 151

Fln protein: MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKRGLTPSQIGVILRDSHGIALSWLKIFLIIVNNNYGVISYVGYCKSY*

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTAACATTGGCTGTGCTGGGCGAAGTGGAGGAAGAGGAGGAGCAGCAGCAACTACAAGACGAAGAGTTTGAGCAGCAGACCATCCGTTCATC_-_ATGGGGCGTATGCACAGTCGAGGAAAAGGTATTTCCTCTTCGGCACTACCGTACAAGAGGACTCCCCCAAGTTGGTTGAAGATTTCATCTCAAGATGTCGAAGATAATATTTGCAAGTTTGCCAAGAGAGGTTTGACGCCATCACAAATTGGTGTGATTCTCCGTGACTCCCATGGAATTGCACTCTCGTGGCTTAAGATTTTTCTCATCATTGTGAACAACAATTATGGAGTCATTTCTTATGTGGGGTATTGCAAGAGCTACTGATTGTTGCTGTAGAAGCTGATTAGACTTTTACAGAAGTACATCAATTATGTTCACCGGATTTTAGTGTTCCTTGTTTTAAGTCTTGACAATTTCGGAGTATTGAATGTTGGGG

Fln Alignment:

AllPine_a_rep_c80441___MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKRGLTPSQIGVILRDSHGIA
A9NRB2________________MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain