UniGene Name: sp_v3.0_unigene129427
Length: 238 nt
UniGene Fasta |
---|
>sp_v3.0_unigene129427
C |
Ace file of the UniGene sp_v3.0_unigene129427 |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Phosphoglycerate kinase (Fragment) n=1 Tax=Picea mariana RepID=O65080_PICMA | - | - | 3.0e-25 | 88% |
FL-Next | sp=Phosphoglycerate kinase; Pinus pinaster (Maritime pine). | - | - | 0.0 | 88% |
Sma3 | Phosphoglycerate kinase | - | - | 0.0 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Phosphoglycerate kinase. | EC:2.7.2.3 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Glycolysis / Gluconeogenesis | 00010 | 0.0 | % | |
Sma3 | Carbon fixation in photosynthetic organisms | 00710 | 0.0 | % | |
Sma3 | Biosynthesis of phenylpropanoids | 01061 | 0.0 | % | |
Sma3 | Biosynthesis of terpenoids and steroids | 01062 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from shikimate pathway | 01063 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid | 01064 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from histidine and purine | 01065 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from terpenoid and polyketide | 01066 | 0.0 | % | |
Sma3 | Biosynthesis of plant hormones | 01070 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 0.0 | % |
Source | Gene names |
---|---|
Sma3 | AT1G79550; AT3G12780; At1g56190; At1g79550; At1g79550/T8K14.3; At3g12780; At3g12810; At3g12810/MBK21.17; CHLREDRAFT_132210; CT114; GSVIVT00035675001; GSVIVT00035677001; MA4_106O17.68; MA4_112I10.62; MICPUCDRAFT_17660; MICPUN_104767; OJ1579_G03.17; OSTLU_4 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
Sma3 | thylakoid | GO:0009579 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | GO:0004365 | Molecular Function | 0.0 | - |
Sma3 | phosphoglycerate kinase activity | GO:0004618 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | NAD binding | GO:0051287 | Molecular Function | 0.0 | - |
Sma3 | glycolysis | GO:0006096 | Biological Process | 0.0 | - |
Sma3 | response to cold | GO:0009409 | Biological Process | 0.0 | - |
Sma3 | reductive pentose-phosphate cycle | GO:0019253 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Peptidase, cysteine peptidase active site | IPR000169 | - | 0.0 | - |
Sma3 | IPR000173 | - | 0.0 | - | |
Sma3 | Phosphoglycerate kinase | IPR001576 | - | 0.0 | - |
Sma3 | Phosphoglycerate kinase, N-terminal | IPR015824 | - | 0.0 | - |
Sma3 | Phosphoglycerate kinase, C-terminal | IPR015901 | - | 0.0 | - |
Sma3 | Phosphoglycerate kinase, conserved site | IPR015911 | - | 0.0 | - |
Sma3 | Aldehyde dehydrogenase, conserved site | IPR016160 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G79550.1 | PGK phosphoglycerate kinase chr1:29924347-29926295 REVERSE LENGTH=401 | 2.0e-28 | 75% |
RefSeq | Arabidopsis thaliana | NP_178073.1 | phosphoglycerate kinase [Arabidopsis thaliana] | 2.0e-28 | 75% |
RefSeq | Populus trichocarpa | XP_002312237.1 | predicted protein [Populus trichocarpa] | 6.0e-29 | 77% |
Full-Lengther Next Prediction |
---|
Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: F4MKM1
Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 78 - 507
Fln protein:
F
Protein Length:
79
Fln nts:
C
Fln Alignment:
AllPine_a_rep_c80371___KFAADANSKVVPASDIPDGWMGLDIGADSIKTFSEALDTTKTVIWNGPMGVFEFITNLPLEPESIAKK
F4MKM1________________KFAADANSKVVPASDIPDGWMGLDIGADSIKTFSEALDTTKTVIWNGPMGVFEF-DKFAAGTESIAKK
SSRs (tot: 1) |
---|
Start position | End position | Sequence | Length |
---|---|---|---|
84 | 96 | GATG GATG GATG G | 13 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain