SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129247

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene129247
CGTCGTGACCTTGGCTGTCACCAGTTGGCCCTGTACCTGTGCTGTACTGTTTGTGTTCAGCCTGCTGGTGACGTTGGCTGTGACTGTGGGTTCTGCTGCTGCTTTCACTTTTCACGGGCCTTTGCTTCAAGGGGGTGCTGTTATTGTATTCCAAACTAGTTTGCAGGTCCAGGACGAGGTTGTGGTTCCCACTGCCTGGAAACAGCAAATATGGCTCCTGCAATAAATTGAATCTGCCTCCTGGTAGCTTGGGTCTCCCAATCCTTGGAGAAACATTGCAATTCTTTGCGCCCAATGACTCCTTCGACGTTCCTCCCTTTGTCAAGCAGCGAAAACTAAGATATGGGCCTATTTTCAAGACGAGCTTAGTGGGAAGGCCAGTGGTGGTGTCCACCGACCCAGACGTGAATCAGCTAGTATTCCAA

Ace file of the UniGene sp_v3.0_unigene129247

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=2 Tax=Populus trichocarpa RepID=B9GW74_POPTR	-	-	1.0e-17	78%
FL-Next	tr=Cytochrome P450 90A20; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Cytochrome P450	-	-	2.479e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Taxane 10-beta-hydroxylase.	EC:1.14.13.76	-	1.603e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Diterpenoid biosynthesis	00904		1.603e-09	%

Source	Gene names
Sma3	At1g12740; CYP87A3; CYP87A7; CYP87A8; CYP87D10; CYP87D11; CYP87D1v2; CYP87D2v1; CYP87D2v2; CYP87D3; CYP87D4; CYP87D8; CYP87D9; GSVIVT00001130001; GSVIVT00002865001; GSVIVT00002867001; GSVIVT00002869001; GSVIVT00004626001; GSVIVT00007380001; GSVIVT00015574

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12740.2	-	5.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_172734.2	cytochrome P450, family 87, subfamily A, polypeptide 2 [Arabidopsis thaliana]	2.0e-16	62%
RefSeq	Populus trichocarpa	XP_002303566.1	cytochrome P450 [Populus trichocarpa]	3.0e-22	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM7

Fln msg: Distance to subject end: 384 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 114 - 487

Fln protein: LWVLLLLSLFTGLCFKGVLLLYSKLVCRSRTRLWFPLPGNSKYGSCNKLNLPPGSLGLPILGETLQFFAPNDSFDVPPFVKQRKLRYGPIFKTSLVGRPVVVSTDPDVNQLVFQ

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACCAGTTGGCCCTGTACCTGTGCTGTACTGTTTGTGTTCAGCCTGCTGGTGACGTTGGCTGTGACTGTGGGTTCTGCTGCTGCTTTCACTTTTCACGGGCCTTTGCTTCAAGGGGGTGCTGTTATTGTATTCCAAACTAGTTTGCAGGTCCAGGACGAGGTTGTGGTTCCCACTGCCTGGAAACAGCAAATATGGCTCCTGCAATAAATTGAATCTGCCTCCTGGTAGCTTGGGTCTCCCAATCCTTGGAGAAACATTGCAATTCTTTGCGCCCAATGACTCCTTCGACGTTCCTCCCTTTGTCAAGCAGCGAAAACTAAGATATGGGCCTATTTTCAAGACGAGCTTAGTGGGAAGGCCAGTGGTGGTGTCCACCGACCCAGACGTGAATCAGCTAGTATTCCAA

Fln Alignment:

AllPine_a_rep_c79918___ETLQFFAPNDSFDVPPFVKQRKLRYGPIFKTSLVGRPVVVSTDPDVNQLVFQ
A9NWM7________________ETLQLIAAYKTSNPEPFVDTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
68		50	50		1.0
69		50	50		1.0
73	50	50			1.0
74		50	50		1.0
76	50			50	1.0
80	50	50			1.0
82	50		50		1.0
85		50	50		1.0
88	50	50			1.0
90		50	50		1.0
91	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
68		50	50		1.0
69		50	50		1.0
73	50	50			1.0
74		50	50		1.0
76	50			50	1.0
80	50	50			1.0
82	50		50		1.0
85		50	50		1.0
88	50	50			1.0
90		50	50		1.0
91	50			50	1.0

Position	A %	C %	G %	T %	Probability
68		50	50		1.0
69		50	50		1.0
73	50	50			1.0
74		50	50		1.0
76	50			50	1.0
80	50	50			1.0
82	50		50		1.0
85		50	50		1.0
88	50	50			1.0
90		50	50		1.0
91	50			50	1.0

Position	A %	C %	G %	T %	Probability
68		50	50		1.0
69		50	50		1.0
73	50	50			1.0
74		50	50		1.0
76	50			50	1.0
80	50	50			1.0
82	50		50		1.0
85		50	50		1.0
88	50	50			1.0
90		50	50		1.0
91	50			50	1.0