SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128778

Length: 462 nt

UniGene Fasta

>sp_v3.0_unigene128778
TTGAGAAAGTTGCAGGCGAGTCTTCGAAGCTCACTCGCTATGGCAAGAGGGACACGCTGTCCTCAAGGGAGGTTCAGACTGCAGTTAAACTTGTTCTTCGTGGTGAGCTTGGCTGTCATTCGTCTCTGAGGGAACTAAGGCCGTCACCAAATTCACATCTACCTGAGCTCACTTTTTTGTGCTTTGGTATTTTCCTTACGGTGTTTCTTGGCACCACACCGTATTTCACAGAATTGTGGCCCTTTTTCATCATGTACCTGTCGATTAGGGTTTCTATTTATTTTTGAAGTTTTTGGATGAATGGCTGAAGATTTGTTTTCAAACATTCAGGCCTTGCCAAATTCTTGTATTTTCCCTAATTTCCAAGGGTTTTGCATAGGTGGGTTTTGTATTGTACACAAGTCTGTGGATGTGGAAGTCGGTCGCCCTCGACGTTGAAAGGGCTATTGAGCGCGTGTTCGC

Ace file of the UniGene sp_v3.0_unigene128778

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI	-	-	3.0e-13	87%
FL-Next	sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Histone H2B	-	-	1.502e-06	-

Source	Gene names
Sma3	At5g22880; MRN17.11;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22880.1	H2B, HTB2 histone B2 chr5:7652130-7652567 REVERSE LENGTH=145	7.0e-12	67%
RefSeq	Arabidopsis thaliana	NP_197679.1	histone H2B [Arabidopsis thaliana]	9.0e-12	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZJ5

Fln msg: Overlapping hits, possible frame ERROR between 122 and 122, your sequence is shorter than subject: 55 - 164

Fln protein: EKVAGESSKLTRYGKRDTLSSREVQTAVKLVLRGELGCHxxSEGTKAVTKFTST*

Protein Length: 56

Fln nts: TTGAGAAAGTTGCAGGCGAGTCTTCGAAGCTCACTCGCTATGGCAAGAGGGACACGCTGTCCTCAAGGGAGGTTCAGACTGCAGTTAAACTTGTTCTTCGTGGTGAGCTTGGCTGTCATxxxxxxTCTGAGGGAACTAAGGCCGTCACCAAATTCACATCTACCTGAGCTCACTTTTTTGTGCTTTGGTATTTTCCTTACGGTGTTTCTTGGCACCACACCGTATTTCACAGAATTGTGGCCCTTTTTCATCATGTACCTGTCGATTAGGGTTTCTATTTATTTTTGAAGTTTTTGGATGAATGGCTGAAGATTTGTTTTCAAACATTCAGGCCTTGCCAAATTCTTGTATTTTCCCTAATTTCCAAGGGTTTTGCATAGGTGGGTTTTGTATTGTACACAAGTCTGTGGATGTGGAAGTCGGTCGCCCTCGACGTTGAAAGGGCTATTGAGCGCGTGTTCGC

Fln Alignment:

AllPine_a_rep_c78417___EKVAGESSKLTRYGKRDTLSSREVQTAVKLVLRGELGCHSVSEGTKAVTKFTST
A9NZJ5________________EKVAAESSKLTRYGKRDTLSSREVQTAVKLVLPGELAKHAVSEGTKAVTKFTST

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain