SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene127089

Length: 1404 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene127089

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12250.1	TUB6 beta-6 tubulin chr5:3961317-3962971 REVERSE LENGTH=449	87%
RefSeq	Arabidopsis thaliana	NP_196786.1	tubulin beta-6 chain [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002322609.1	tubulin, beta chain [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: your sequence is shorter than subject: 318 - 445

Fln protein: LGTNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMILTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVYMNDLVSEYMQYQDASAEDDEYYDDEESAQES*

Protein Length: 319

Fln nts: CTGGGAACGAACTGGGCCAAGGGCCATTACACTGAGGGGGCCGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATACTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCTGGCCAGTTGAACTCAGATTTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGCCATGGCAGGTATCTGACGGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCTATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTATACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGTGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAG___ATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTCCTGGAGGTTCAAGAATTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTTGTCTGATATATAGCTACATGACATGTGTTTTAGCCTATGTTTATCAGATGCAGCACTGGCAAGCTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTCATTTTTACTACCTTGTGGCAACTATGATTTTTACTACCTTGTGATCCATATGCTGATTATGGTTGTATGTGAGGTTCCTAGTGTCCGGTGTTCTAATTAGTTAAAATAAGATTGTCTATCTTATGTTGT

Fln Alignment:

AllPine_a_rep_c68307___GTNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMILTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRV--------------------------------YMNDLVSEYMQ
D5ABQ9________________GNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
459			33	66	0.997452
461	33			66	0.997452
563		87	12		0.992554
564		87	12		0.992554
772	83		16		0.994512
825			75	25	0.996473
865	50		50		1.0
866		50	50		1.0
867	50		50		1.0
992	83		16		0.994512
1041		20		80	0.995493
1046		20		80	0.995493
1292		12		87	0.992554
1293		87		12	0.992554
1300	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain