SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126757

Length: 512 nt

UniGene Fasta

>sp_v3.0_unigene126757
GCCAGCAAGGCGGCGGTGGAGATGATGACGAGAATCCTGGCGCAGGAATTGAGGGGCACTCAGATTACTGCAAATTGTGTGGCGCCAGGCCCTGTTGCTACCGATATGTTCTTTGCCAGAGCGAGGCAGCTACAGAAGGTGGGAAGGTGGAAGATGTGGCTCCCCTGGTTGCGTTCTTGGCGAGTGACGAAGAAGAGTGGTTGGGGAAGGTGGAAGATGTGGCTCCCCTGGTTGCGTTCTTGGCGAGTGACGAAGGAGAGTGGGTAAATGCTCAGATTGTTCGTGTCAATGGAGGCGAGGTATGATGAGTAAAATTGAATGGTTTCTATGGCTATGTTTTTTTCTTTCTTTCTTGTTTCTTTATGTATTGTGCAGCTCACTGTACTGGTGTTTTCGGCCCTCACTTGGGGGTGGTTTTAATGAATTGTGTTCATTCCTGTGTTTGAAGAAGTCGGTCCGAGTCTTTTATGAACCTCACTTGGGGTTTTAATGGATAGTGTTGGAAGCAGTCA

Ace file of the UniGene sp_v3.0_unigene126757

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	4.0e-29	100%
FL-Next	sp=Short-chain type dehydrogenase/reductase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Sma3	Short-chain type dehydrogenase, putative	-	-	1.58e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	3.902e-08	-

Source	Gene names
Sma3	AT4g13180; At3g03980; At3g04000; At4g13180; F17N18.70; GSVIVT00025486001; GSVIVT00025488001; LOC_Os03g53690; OSJNBa0050F10.23; OSJNBa0069E14.13; Os03g0748100; Os06g0185100; Os07g0561500; OsI_13504; OsI_21942; OsI_25050; OsI_26479; OsJ_24737; P0406F06.12;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to arsenic-containing substance	GO:0046685	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03980.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:1031786-1033081 FORWARD LENGTH=270	3.0e-20	78%
RefSeq	Arabidopsis thaliana	NP_187048.1	3-oxoacyl-[acyl-carrier protein] reductase [Arabidopsis thaliana]	4.0e-20	78%
RefSeq	Populus trichocarpa	XP_002325412.1	predicted protein [Populus trichocarpa]	1.0e-22	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q08632

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 102 - 271

Fln protein: ASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFxxSEAATEGGKVEDVAPLVAFLASDEEEWLGKVEDVAPLVAFLASDEGEWVNAQIVRVNGGEV*

Protein Length: 103

Fln nts: GCCAGCAAGGCGGCGGTGGAGATGATGACGAGAATCCTGGCGCAGGAATTGAGGGGCACTCAGATTACTGCAAATTGTGTGGCGCCAGGCCCTGTTGCTACCGATATGTTCTTTxxxxxxAGCGAGGCAGCTACAGAAGGTGGGAAGGTGGAAGATGTGGCTCCCCTGGTTGCGTTCTTGGCGAGTGACGAAGAAGAGTGGTTGGGGAAGGTGGAAGATGTGGCTCCCCTGGTTGCGTTCTTGGCGAGTGACGAAGGAGAGTGGGTAAATGCTCAGATTGTTCGTGTCAATGGAGGCGAGGTATGATGAGTAAAATTGAATGGTTTCTATGGCTATGTTTTTTTCTTTCTTTCTTGTTTCTTTATGTATTGTGCAGCTCACTGTACTGGTGTTTTCGGCCCTCACTTGGGGGTGGTTTTAATGAATTGTGTTCATTCCTGTGTTTGAAGAAGTCGGTCCGAGTCTTTTATGAACCTCACTTGGGGTTTTAATGGATAGTGTTGGAAGCAGTCA

Fln Alignment:

AllPine_a_rep_c65679___ASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAxQSEAATEGGKVEDVAPLVAFLASDEEEWLGKVEDVAPLVAFLASDEGEWVNAQIVRVNGGEV
Q08632________________ASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAxKSEAAVEAG-----------VKSNPFERLGKVEDVAPLVAFLASDEGEWVNAQVVRVNGGQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
349		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
341	354	TTTC TTTC TTTC TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain