SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126729

Length: 1505 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126729

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] emb\|CAB79765.1\| cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana] gb\|AAK68826.1\| cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana] gb\|AAN65066.1\| cinnamoyl-C	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30470.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:14894263-14896506 FORWARD LENGTH=303	53%
RefSeq	Arabidopsis thaliana	NP_194776.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002326731.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL44

Fln msg:

Fln protein: MPVFPSGLYPSEGNGKVVCVMDASSYVGLWIVQGLLQRGYSVHATVQRDAGEVESLRKLQGDRLQIFYADVLDYHSITDALKGCSGLFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGDYKVNALDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRATLSS*

Protein Length: 314

Fln nts: ATCCTACCTTTTAAAGCCCCTCCCTGGCCTTCATTCCATGGGGACAGAGTTGTTCATGCAGTGCTAGGAGGAGGAGCAGCGTTGCAATTGGGGAAAATTTCAAAATCAAGAACAAGAGGACAGAAGTAAGTTTGTGGAAATAGCAACC_-_ATGCCGGTGTTTCCTTCTGGTCTGTACCCCTCTGAGGGCAATGGCAAGGTCGTTTGTGTCATGGATGCGTCCAGTTATGTAGGTTTGTGGATTGTTCAGGGCCTTCTGCAACGAGGCTATTCAGTGCATGCCACTGTGCAGAGAGACGCTGGCGAGGTTGAGTCTCTCAGAAAATTGCAGGGGGATCGATTGCAGATCTTCTATGCAGATGTCTTGGATTATCACAGCATTACCGATGCGCTCAAGGGCTGTTCTGGTCTGTTTTATACCTTTGAGCACCCTCAGAGTGCTGCAGGCTATGATGAAGTGATGGCAGAAATTGAAGTACAAGCAGCCCACAATGCACTGGAAGCGTGTGCTCAGACTGAGACCATTGAGAAAGTTGTGTTCACTTCTTCTGTGGCTGCAGCAATTTGGAGAGAAGATGGAGACTACAAGGTTAATGCCCTTGACGAGAGGCATTGGAGTGATGCAAATCTTTGCAGGAAATTGAAGTTGTGGTACGCATTAGCCAAGACACTGTCAGAGAAGGCTGCATGGGCGCTGGCAATGGACAGAGGGTTGAATATGGTGACAATCAACGCATCTCTGATTGTAGGACCTGGCATCACATACAAAAGCTCAGGATCTACCATTGCATATCTTAAAGGGGCTGCACAAATGTATGAGAAGGGCACTTTAGCTAGTGTGGACATAAGTTTTCTAGCGGATGCACATATATGTGCTTATGAAGATCCATCTGCCTATGGGAGGTATATTTGTTTCAATCAAATAGTCAGTAAGGCAGAGGATGCTGTCAATTTAGCACAGAGCTTGCGTCACCTGATACCGTTCCCTGATAGGTTTGAAGACTCAACGGTCTACCAACAGCGTCTGAGTAATAAGAAGTTGACTGGATTGATGGTTGGATATGGAAATCGTGCAACCCTAAGCAGCTAA___CTGTAAGGGACGGGGGGCGGCTTTTCCCCATGTTTACAGCTCATCAGCAGCCATGAATGAGGGGCACAAGAAAACTTGGGGAGATTACATGTTCAGACTACATGCATTATTGTACATCATGTAATATAATTTTCCCTTTTAGGTTCGTTGGATCGTTGGAATGTTGGCAATAAGTCGATTTTCTTCACGACGAGCATTAAAGTCTCAACCTTCATTTGATAGTTGGCAACAATCCTAAGTCGATTTCCATAACGACCAGCAATGAAGTTTTAGCCTGTCACTAAGGCTTTCAACCATGCGCATTTTTTTTGTTAATCGCTGAAGTAAAATCTATTTCCTGATTTCTTGCAAAAGTGCAAGCAAACTTTGTTGATGGGCTGTTTGGTGTGTGAATAAAAAGTGCTATACCGCACATTCT

Fln Alignment:

AllPine_a_rep_c65471___MPVFPSGLYPSEGNGKVVCVMDASSYVGLWIVQGLLQRGYSVHATVQRDAGEVESLRKLQGDRLQIFYADVLDYHSITDALKGCSGLFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGDYKVNALDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLASVDISFLADAHICAYEDPSAYGRYICFNQIVSKAEDAVNLAQSLRHLIPFPDRFEDSTVYQQRLSNKKLTGLMVGYGNRA
A9NL44________________MPVFPPGLDASEGNGKVVCVMDASSYVGSWIVQGLLQRGYSVHATVQRDAGEVESLRKLHENRLQIFYADVLDYHSITDALKGCSALFYTFEHPQSAAGYDEVMAEIEVQAAHNALEACAQTETIEKVVFTSSVAAAIWREDGEYKVNAIDERHWSDANLCRKLKLWYALAKTLSEKAAWALAMDRGLNMVTINASLIVGPGITYKSSGSTIAYLKGAAQMYEKGTLSSVDIRFLADAHICAYEDPSAYGRYICFNQIVSNAEDVANLAQSLRHLVPFPDRFEDSTVHQQRLSNKKLTGLMVGFGNRA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
396		96		3	0.980996
641			90	10	0.90298
670	80		20		0.995493
1400	80			20	0.995494
1401	25			50	0.995539
1416		66		33	0.997452
1435		25		75	0.996474
1440	75	25			0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain