SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126630

Length: 1885 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126630 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31750.1	WIN2 HOPW1-1-interacting 2 chr4:15364657-15367207 REVERSE LENGTH=311	78%
RefSeq	Arabidopsis thaliana	NP_194903.2	putative protein phosphatase 2C 59 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002308720.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLSNIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG*

Protein Length: 283

Fln nts: GGCGAATGCGTGCGTCACAGCTTGGTTGGACTGGATTCCTTTTACCCCTTTACTTTTGATACTTTCTTCGTTCGTTTCTCAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATC_-_ATGAGTTATCTTAGTAATATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAA___CAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACTGAATAAACATGCTTTTATAAATTGTTAAGTTTGTTTACCATTTTATTATGTTCATCAATATCAAGAAGCAATGCCTGGATTCAACTCCTGTCAAATAAGTGTATGGGTTAAATGGGCTTTATACCTGGGATTTTATATTATTTGTCAAAAAATATTCATTATAATTATGATCTTTGGATTGTTAATAATAATGAATAATTT

Fln Alignment:

AllPine_a_rep_c64470___MSYLSNIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG
A9NWY3________________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSHG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1073	25		75		0.996473
1461		18		81	0.999994
1491		18		81	0.999994
1851		16	83		0.999991
1852	83	16			0.999991
1853		16	83		0.999991
1860	72	27			1.0
1862		36	45	18	1.0
1863	63	27	9		1.0
1864	63	9		27	1.0
1865		11	77	11	0.968132
1866	85			14	0.993533
1867	71		14	14	0.984337
1870		16		83	0.994512
1872			16	83	0.994513
1874	80	20			0.995498
1877	80		20		0.995493
1880	75	25			0.996477
1882	75	25			0.996477
1884	25		75		0.99649
1885		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain