SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126619

Length: 815 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene126619 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyoxylate reductase n=1 Tax=Zea mays RepID=B6TL24_MAIZE	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Glycerate dehydrogenase, putative	-	-	2.043e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glyoxylate reductase.	EC:1.1.1.26	-	1.363e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630		1.363e-21	%
Sma3	Metabolic pathways	01100		1.363e-21	%

Source	Gene names
Sma3	At1g12550; At1g79870; At2g45630; B0616E02-H0507E05.10; B0616E02-H0507E05.11; B0616E02-H0507E05.8; F19K16.17; GSVIVT00001059001; GSVIVT00001062001; GSVIVT00026304001; GSVIVT00034379001; GSVIVT00034381001; HPPR; LOC_Os11g12290; OSJNBb0004G23.11; OSJNBb0085F

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	hydroxyphenylpyruvate reductase activity	GO:0047995	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein chr1:30044794-30045851 FORWARD LENGTH=313	52%
RefSeq	Arabidopsis thaliana	NP_178105.1	putative D-isomer specific 2-hydroxyacid dehydrogenase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002304205.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
683	66	33			0.997452
684	66	33			0.997452
687		33	33	33	0.99775

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain