SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene126128

Length: 714 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene126128

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9SFL0_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Chromosome chr14 scaffold_164, whole genome shotgun sequence	-	-	2.206e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.007e-11	-

Source	Gene names
Sma3	10A19I.3; AT1G08890; AT1G08900; AT3G05165; At1g08890; At1g08900; At1g08920; At1g08930; At1g19450; At1g54730; At1g75220; At2g48020; At3g05150; At3g05155; At3g05160; At3g05165; At3g05400; At3g20460; At4g04750; At4g04760; At5g18840; At5g27350; At5g27360; ERD

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G48020.2	Major facilitator superfamily protein chr2:19644441-19647007 FORWARD LENGTH=463	60%
RefSeq	Arabidopsis thaliana	NP_850483.1	sugar transporter ERD6-like 7 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002319570.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
342			75	25	0.996486
621	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain