SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125483

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene125483
AGATAGCAAAATCTGTACATCCTTTTACATGGTGTGCTTTTATGTCCCCTGTTCTTTGTTTGGAACTGAAGATATATGGCCAGTGGATGCTAGGAGGTCATAGAAGATTATCTGAAATAGCTAACCCTACAAACTATTTGGCAATTGTTGGAAACTTTGTTGGGGCATTGCTTGGAGCAGCAACTGGATGGAAGGAGGGAGCTA

Ace file of the UniGene sp_v3.0_unigene125483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C4dic_mal_tran domain containing protein	-	-	6.0e-06	25%
FL-Next	sp=S-type anion channel SLAH3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Tellurite resistance protein tehA, putative	-	-	4.622e-09	-

Source	Gene names
Sma3	AT4g27970; At1g12480; At4g27970; At5g24030; B1003C08.2; GSVIVT00001037001; GSVIVT00037797001; OJ1014_E09.31; OSJNBa0009C07.7; OSJNBa0019K04.20; OSJNBb0093M23.26; Os01g0226600; Os01g0385400; Os01g0623200; Os04g0574700; Os05g0219900; Os05g0584900; Os07g0181

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	anion transport	GO:0006820	Biological Process	-
Sma3	cellular ion homeostasis	GO:0006873	Biological Process	-
Sma3	response to humidity	GO:0009270	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to carbon dioxide	GO:0010037	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	multicellular organismal water homeostasis	GO:0050891	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	C4-dicarboxylate transporter/malic acid transport protein	IPR004695	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24030.1	SLAH3 SLAC1 homologue 3 chr5:8118618-8120993 REVERSE LENGTH=635	3.0e-23	69%
RefSeq	Arabidopsis thaliana	NP_197791.1	SLAC1 homologue 3 [Arabidopsis thaliana]	3.0e-23	69%
RefSeq	Populus trichocarpa	XP_002329721.1	c4-dicarboxylate transporter/malic acid transport protein [Populus trichocarpa]	3.0e-13	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FLV9

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 67 - 635

Fln protein: IAKSVHPFTWCAFMSPVLCLELKIYGQWMLGGHRRLSEIANPTNYLAIVGNFVGALLGAATGWKEGA

Protein Length: 68

Fln nts: AGATAGCAAAATCTGTACATCCTTTTACATGGTGTGCTTTTATGTCCCCTGTTCTTTGTTTGGAACTGAAGATATATGGCCAGTGGATGCTAGGAGGTCATAGAAGATTATCTGAAATAGCTAACCCTACAAACTATTTGGCAATTGTTGGAAACTTTGTTGGGGCATTGCTTGGAGCAGCAACTGGATGGAAGGAGGGAGCTA

Fln Alignment:

AllPine_a_c62449___FTWCAFMSPVLCLELKIYGQWMLGGHRRLSEIANPTNYLAIVGNFVGALLGAATGWKEG
Q9FLV9________________FLWYLLMFPFICLELKIYGQWMSGGQRRLSRVANPTNHLSVVGNFVGALLGASMGLREG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain