SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene125417

Length: 258 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene125417
TGGGAGGAAGTTGTACGGTCTGCATTTGCGTCTTTGAACAAGAAGGCAATAGAGTTATTTCAGTTGAAGAGTTGGCTCAGGAATTGAATGTTGGGCCAAATGCCTACGCAACTTTGCATGATTGGATTAGGCACACAGATGGGAAACTCAGCTTTTTTGGCTTCACCAAGTTTCTACATGGTGTTACATGGCGATCAAATAGGGGCACACAATGCTTACGCTTCTAGTTATTTAACAGTTGTGATTTTTTAATACATT

Ace file of the UniGene sp_v3.0_unigene125417 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine protein kinase pk23 [Solanum lycopersicum]	-	-	6.0e-18	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	CDPK-related protein kinase	-	-	4.055e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	3.694e-09	-

Source	Gene names
Sma3	At1g49580; At2g46700; At3g19100; At3g49370; At3g50530; At5g24430; CRK; CRK1; CRK2; CRK3; CRK4; CRK5; CRK7; F14J22.18; F2K15.230; GSVIVT00009692001; GSVIVT00011963001; GSVIVT00026139001; GSVIVT00036544001; GSVIVT00037193001; LOC_Os10g36710; MCK2; O9009; OJ

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46700.1	ATCRK3, CRK3 CDPK-related kinase 3 chr2:19182968-19186430 REVERSE LENGTH=595	7.0e-21	70%
RefSeq	Arabidopsis thaliana	NP_001154582.1	CDPK-related kinase 3 [Arabidopsis thaliana]	2.0e-21	70%
RefSeq	Populus trichocarpa	XP_002320890.1	predicted protein [Populus trichocarpa]	6.0e-23	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM8

Fln msg: your sequence is shorter than subject: 75 - 589

Fln protein: GGSCTVCICVFEQEGNRVISVEELAQELNVGPNAYATLHDWIRHTDGKLSFFGFTKFLHGVTWRSNRGTQCLRF*

Protein Length: 76

Fln nts: TGGGAGGAAGTTGTACGGTCTGCATTTGCGTCTTTGAACAAGAAGGCAATAGAGTTATTTCAGTTGAAGAGTTGGCTCAGGAATTGAATGTTGGGCCAAATGCCTACGCAACTTTGCATGATTGGATTAGGCACACAGATGGGAAACTCAGCTTTTTTGGCTTCACCAAGTTTCTACATGGTGTTACATGGCGATCAAATAGGGGCACACAATGCTTACGCTTCTAG___TTATTTAACAGTTGTGATTTTTTAATACATT

Fln Alignment:

AllPine_a_c62369___FEQEGNRVISVEELAQELNVGPNAYATLHDWIRHTDGKLSFFGFTKFLHGVTWRSNRGTQ
A9NWM8________________FEQEGNKVISVEELAREMNLAPTAHTVLHDWIRSTDGKLSFHGFTKFLHGVTVRSSTRPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain