SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene124095

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene124095
AATGTAAAAGCATGCTGCAGAGGACCTCTTGAATGAACTCAAATCCCATCATGGTGCAGTAATTCAACAGATGAGGCAAATGGTAGAGATCTACATTAAACTAGCAGAACTTGAAACTAAGAAGGAGGATACAAACAGAAAAATACCATTGCCAAGGGATGTGCGTAGTGTCCGGCAGCTTGAACTGGTCCCTGTGATAACTGCTACCCTTCCAGTTGAT

Ace file of the UniGene sp_v3.0_unigene124095

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana]	-	-	1.0e-21	67%
FL-Next	sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%

Source	Gene names
Sma3	ATM; At3g48190; GSVIVT00016088001; OsI_00057; OsJ_00056; PHYPADRAFT_85498; RCOM_1510550; T24C20.70;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Ataxia-Telangiectasia Mutated	IPR015519	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48190.1	ATM, ATATM ataxia-telangiectasia mutated chr3:17797628-17828361 FORWARD LENGTH=3845	6.0e-27	67%
RefSeq	Arabidopsis thaliana	NP_190402.6	serine/threonine-protein kinase [Arabidopsis thaliana]	8.0e-27	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3G7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 373 aas, your sequence is shorter than subject: 73 - 3856

Fln protein: M*KHAAEDLLNELKSHHGAVIQQMRQMVEIYIKLAELETKKEDTNRKIPLPRDVRSVRQLELVPVITATLPVD

Protein Length: 74

Fln nts: AATGTAAAAGCATGCTGCAGAGGACCTCTTGAATGAACTCAAATCCCATCATGGTGCAGTAATTCAACAGATGAGGCAAATGGTAGAGATCTACATTAAACTAGCAGAACTTGAAACTAAGAAGGAGGATACAAACAGAAAAATACCATTGCCAAGGGATGTGCGTAGTGTCCGGCAGCTTGAACTGGTCCCTGTGATAACTGCTACCCTTCCAGTTGAT

Fln Alignment:

AllPine_a_c60616___KHAAEDLLNELKSHHGAVIQQMRQMVEIYIKLAELETKKEDTNRKIPLPRDVRSVRQLELVPVITATLPVD
Q9M3G7________________KLAAEHLLQDVSHYHGPMIRQMKQLVDIYIKLAELETRREDTNRKVALPREIRSVKQLELVPVVTATIPVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain