SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene123779

Length: 178 nt

UniGene Fasta

>sp_v3.0_unigene123779
CTGGCTGAAAACTGAAAGCCCCCATGGGAGAATCGAGAGAGTCCTGAAGGTGCACAACGATGCAGAAAACGCTTGCAAGTTTCGAGGAATTTCGTGATATGATTAAGTCAAAGGCAAGCAAATTGCCCAAGAAGCACCCCAGATGCCTGGCAGATGGGAATGAGCTTCTGAGGTTCCA

Ace file of the UniGene sp_v3.0_unigene123779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2H2 type zinc finger protein [Arabidopsis thaliana] emb\|CAA19718.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB79579.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABN04797.1\| At4g27240 [Arabidopsis thaliana] dbj\|BAH30541.1\| hypothetical prote	-	-	9.0e-16	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	C2H2 zinc finger protein	-	-	9.335e-08	-

Source	Gene names
Sma3	AT4g27240; At4g27240; At5g54630; B1070A12.33; GSVIVT00012838001; GSVIVT00015438001; GSVIVT00027440001; Os01g0785900; OsI_04015; OsJ_03710; POPTRDRAFT_1097187; POPTRDRAFT_209759; POPTRDRAFT_569056; POPTRDRAFT_800370; RCOM_0180640; RCOM_0906580; VITISV_0134

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27240.1	zinc finger (C2H2 type) family protein chr4:13640160-13641640 FORWARD LENGTH=431	6.0e-18	79%
RefSeq	Arabidopsis thaliana	NP_567769.1	C2H2 type zinc finger protein [Arabidopsis thaliana]	7.0e-18	79%
RefSeq	Populus trichocarpa	XP_002317560.1	predicted protein [Populus trichocarpa]	2.0e-17	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQN9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 58 - 375

Fln protein: G*KLKAPMGESRES*RCTTMQKTLASFEEFRDMIKSKASKLPKKHPRCLADGNELLRF

Protein Length: 59

Fln nts: CTGGCTGAAAACTGAAAGCCCCCATGGGAGAATCGAGAGAGTCCTGAAGGTGCACAACGATGCAGAAAACGCTTGCAAGTTTCGAGGAATTTCGTGATATGATTAAGTCAAAGGCAAGCAAATTGCCCAAGAAGCACCCCAGATGCCTGGCAGATGGGAATGAGCTTCTGAGGTTCCA

Fln Alignment:

AllPine_a_c60235___QKTLASFEEFRDMIKSKASKLPKKHPRCLADGNELLRF
B8LQN9________________QRTINKFEDYRDMVKAKANKSAKKHPRCIADGNELLRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain