SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122560

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene122560
GAGATTGTTGCAACCTTAATTAAGAGTGGAGTGGATGCAAACTCATGGGATCGGATGCTGTTGCGTTCAGCCAAGCCTGCTTTGTATGCAAATATAGACTGCACACCACTGATTGCTGCTATTGTCAGCCGGCAAGTTTCTGTAGTGAAACTTTTGTTGGAGGCCGGTGTAAATACTGATTGTAAAGTTAGCATCGGAGCTTGGTCATGGGATGTAAATTCAGGTGAAGAGTTGCGTGTTGGGGCA

Ace file of the UniGene sp_v3.0_unigene122560

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin-like protein [Arabidopsis thaliana] dbj\|BAF01149.1\| ankyrin like protein [Arabidopsis thaliana]	-	-	2.0e-26	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%
Sma3	Ankyrin repeat-containing protein, putative	-	-	1.279e-09	-

Source	Gene names
Sma3	At5g14230; F18O22_20; GSVIVT00000487001; GSVIVT00020545001; GSVIVT00035060001; OSJNBa0063K04.42; OSJNBa0076N16.7; OSJNBa0078K05.3; OSJNBa0084K20.9; Os02g0457500; Os04g0490300; OsI_16417; OsJ_06619; POPTRDRAFT_768979; RCOM_1081000; RCOM_1314300; RCOM_16784

Source	InterPros	Term	Type	e value	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14230.1	" CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 2535	7.0e-33	67%
RefSeq	Arabidopsis thaliana	NP_196927.4	uncharacterized protein [Arabidopsis thaliana]	9.0e-33	67%
RefSeq	Populus trichocarpa	XP_002314546.1	predicted protein [Populus trichocarpa]	4.0e-31	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HU89

Fln msg: Distance to subject end: 497 aas, your sequence is shorter than subject: 82 - 763

Fln protein: EIVATLIKSGVDANSWDRMLLRSAKPALYANIDCTPLIAAIVSRQVSVVKLLLEAGVNTDCKVSIGAWSWDVNSGEELRVGA

Protein Length: 83

Fln nts: GAGATTGTTGCAACCTTAATTAAGAGTGGAGTGGATGCAAACTCATGGGATCGGATGCTGTTGCGTTCAGCCAAGCCTGCTTTGTATGCAAATATAGACTGCACACCACTGATTGCTGCTATTGTCAGCCGGCAAGTTTCTGTAGTGAAACTTTTGTTGGAGGCCGGTGTAAATACTGATTGTAAAGTTAGCATCGGAGCTTGGTCATGGGATGTAAATTCAGGTGAAGAGTTGCGTGTTGGGGCA

Fln Alignment:

AllPine_a_c58782___EIVATLIKSGVDANSWDRMLLRSAKPALYANIDCTPLIAAIVSRQVSVVKLLLEAGVNTDCKVSIGAWSWDVNSGEELRVG
F6HU89________________DVADTLIKNGVDINCADRVLLRSLKPALHANIDCTPLVAAVVSRQVSMAKYLLEAGAKTDCYVRLGAWSWDIFSGEELRVG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain