SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene122146

Length: 161 nt

UniGene Fasta

>sp_v3.0_unigene122146
ATGGGGTTTGCTTTTCTTATTACAACTACTACACTGTGCTCCATCTTGCAGGCCCGGTGCACTTCTTGTTCTTTATGCCCTAGCTAGCACATCAGAGCTTGGATGGGCTGCTGCAAAACATGGAGGAGTTGTGTACATTCTCGAACTTGTTTTACCTGTCC

Ace file of the UniGene sp_v3.0_unigene122146

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AEC07904.1\| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-14	80%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	86%

Source	Gene names
Sma3	At2g26890; GSVIVT00016801001; LOC_Os10g42439; OSJNBa0003O19.5; Os10g0575200; OsI_34763; OsJ_32568; PHYPADRAFT_133871; PHYPADRAFT_163817; RCOM_0925750; VITISV_014674;

Source	GOs	Term	Type	Identity
Sma3	late endosome	GO:0005770	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	endosome organization	GO:0007032	Biological Process	-
Sma3	vacuole organization	GO:0007033	Biological Process	-
Sma3	amyloplast organization	GO:0009660	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	negative gravitropism	GO:0009959	Biological Process	-
Sma3	response to starvation	GO:0042594	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	VQ	IPR008889	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015609	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26890.1	GRV2, KAM2 DNAJ heat shock N-terminal domain-containing protein chr2:11462327-11473841 REVERSE LENGTH=2554	4.0e-19	80%
RefSeq	Arabidopsis thaliana	NP_180257.3	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	5.0e-19	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SAI1

Fln msg: Distance to subject end: 440 aas, your sequence is shorter than subject: 53 - 2622

Fln protein: WGLLFLLQLLHCAPSCRPGALLVLYALASTSELGWAAAKHGGVVYILELVLPV

Protein Length: 54

Fln nts: ATGGGGTTTGCTTTTCTTATTACAACTACTACACTGTGCTCCATCTTGCAGGCCCGGTGCACTTCTTGTTCTTTATGCCCTAGCTAGCACATCAGAGCTTGGATGGGCTGCTGCAAAACATGGAGGAGTTGTGTACATTCTCGAACTTGTTTTACCTGTCC

Fln Alignment:

AllPine_a_c58270___LLFLLQLLHCAPSCRPGALLVLYALASTSELGWAAAKHGGVVYILELVLP
A9SAI1________________LLLLLQLLHCAPACRPGALRVLYSLASTSELAWAAAKHGGVVYILQLILP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain