SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120281

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene120281
TTTCCAGCTTTCCAGACCAGTCAACGAATCAATCATGCAGACCACCATGAACAAGTCTTTCCTGGGACAGAGCGTGGCCTTCAAGCCCGCCAGCTCCGGCCGCGCCTCTGCTAAGGCTCTGGTCGTTGAGGCCCGCAGGACCGCCAAGAAGGCTGCCAGCTCCACTGGCGCCTCTGTCTGGTACGGAGCCGACAGGCCCAAGTGGCTGGGACCCTTCTCGGAGGGCACCACCCCCGACTACCTGACTGGAGAGTACCCCGGAGACTACGGCTGGGACACTGCCGGCCTCTCCGCCGACCCCGAGACCTTTGCCAAGTACA

Ace file of the UniGene sp_v3.0_unigene120281

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast light-harvesting chlorophyll-a/b binding protein n=1 Tax=Ankistrodesmus convolutus RepID=C4P6Y3_9CHLO	-	-	5.0e-19	85%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	87%
Sma3	LHCP	-	-	0.0	-

Source	Gene names
Sma3	AB165; AB180; AB80; ABC; At1g29910; At1g29910/F1N18.5; At1g29920; At2g05070; At2g05070/F1O13.20; At2g05100; At2g34420; At2g34420/T31E10.24; At2g34430; At2g34430/T31E10.23; At3g27690; CAB; CAB-151; CAB1; CAB13; CAB16; CAB1B; CAB2; CAB21; CAB215; CAB22L; CA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	photosystem II	GO:0009523	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	chlorophyll binding	GO:0016168	Molecular Function	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05070.1	LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 chr2:1799436-1800329 REVERSE LENGTH=265	4.0e-24	63%
RefSeq	Arabidopsis thaliana	NP_178582.1	photosystem II light harvesting complex protein 2.2 [Arabidopsis thaliana]	5.0e-24	63%
RefSeq	Populus trichocarpa	XP_002321186.1	light-harvesting complex II protein Lhcb2 [Populus trichocarpa]	4.0e-23	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q00984

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 95 - 266

Fln protein: MQTTMNKSFLGQSVAFKPASSGRASAKALVVEARRTAKKAASSTGASVWYGADRPKWLGPFSEGTTPDYLTGEYPGDYGWDTAGLSADPETFAKY

Protein Length: 96

Fln nts: TTTCCAGCTTTCCAGACCAGTCAACGAATCAATC_-_ATGCAGACCACCATGAACAAGTCTTTCCTGGGACAGAGCGTGGCCTTCAAGCCCGCCAGCTCCGGCCGCGCCTCTGCTAAGGCTCTGGTCGTTGAGGCCCGCAGGACCGCCAAGAAGGCTGCCAGCTCCACTGGCGCCTCTGTCTGGTACGGAGCCGACAGGCCCAAGTGGCTGGGACCCTTCTCGGAGGGCACCACCCCCGACTACCTGACTGGAGAGTACCCCGGAGACTACGGCTGGGACACTGCCGGCCTCTCCGCCGACCCCGAGACCTTTGCCAAGTACA

Fln Alignment:

AllPine_a_c55995___VWYGADRPKWLGPFSEGTTPDYLTGEYPGDYGWDTAGLSADPETFAK
Q00984________________IWYGPDRPKYLGPFSEGT-PSYLTGEFPGDYGWDTAGLSADPETFAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain