SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120265

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene120265
AGGTCAAAATGCCAATGCCAGATGTAATGAGTGCAGTACTGGCTTTGGATGACACAGTTTTAGATATTGATCAAGTGGAAAACCTCATAAAGTTTGCCCCACAAAAGAAGAAATGGATCTCCTCAGGGTAGGCACCA

Ace file of the UniGene sp_v3.0_unigene120265

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Formin-like protein 20 n=1 Tax=Arabidopsis thaliana RepID=FH20_ARATH	-	-	7.0e-10	67%
FL-Next	sp=Formin-like protein 6; Oryza sativa subsp. japonica (Rice).	-	-	0.0	72%

Source	Gene names
Sma3	FH12; FH6; GSVIVT00032769001; H0211F06-OSIGBa0153M17.6; LOC_Os04g17120/LOC_Os04g17130; LOC_Os08g17820; OJ1003_E05.5-1; OSJNBa0091C12.4; OSJNBa0091C12.5; Os04g0244900/Os04g0245000; Os08g0280200; OsI_15084; OsI_28586; OsJ_025644; OsJ_14028; OsJ_26724; P0026

Source	GOs	Term	Type	Identity
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	cellular component organization	GO:0016043	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07740.1	actin binding chr5:2459076-2466580 REVERSE LENGTH=1649	3.0e-12	67%
RefSeq	Arabidopsis thaliana	NP_174461.3	formin-like protein 14 [Arabidopsis thaliana]	2.0e-11	67%
RefSeq	Populus trichocarpa	XP_002330104.1	predicted protein [Populus trichocarpa]	9.0e-12	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6ZCX3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 302 aas, your sequence is shorter than subject: 43 - 1364

Fln protein: VKMPMPDVMSAVLALDDTVLDIDQVENLIKFAPQKKKWISSG*

Protein Length: 44

Fln nts: AGGTCAAAATGCCAATGCCAGATGTAATGAGTGCAGTACTGGCTTTGGATGACACAGTTTTAGATATTGATCAAGTGGAAAACCTCATAAAGTTTGCCCCACAAAAGAAGAAATGGATCTCCTCAGGGTAGGCACCA

Fln Alignment:

AllPine_a_c55972___VKMPMPDVMSAVLALDDTVLDIDQVENLIKFAPQKKK
Q6ZCX3________________VKMPLPDLMSAILTLDDTILDADQVENLIKFTPTKEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain